Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilA1   Type   Machinery gene
Locus tag   AOY38_RS06075 Genome accession   NZ_CP012832
Coordinates   1296066..1296572 (-) Length   168 a.a.
NCBI ID   WP_010872381.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 6803 substr. GT-G     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1279640..1301853 1296066..1296572 within 0


Gene organization within MGE regions


Location: 1279640..1301853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY38_RS05990 (AOY38_05990) - 1279640..1280410 (-) 771 WP_010872364.1 SDR family NAD(P)-dependent oxidoreductase -
  AOY38_RS05995 (AOY38_05995) sppA 1280434..1282266 (-) 1833 WP_010872365.1 signal peptide peptidase SppA -
  AOY38_RS06000 (AOY38_06000) - 1282263..1282775 (-) 513 WP_010872366.1 Ycf51 family protein -
  AOY38_RS06005 (AOY38_06005) - 1282814..1283599 (+) 786 WP_010872367.1 alpha/beta hydrolase -
  AOY38_RS06010 (AOY38_06010) hemA 1283733..1285016 (+) 1284 WP_010872368.1 glutamyl-tRNA reductase -
  AOY38_RS06015 (AOY38_06015) - 1285178..1285975 (+) 798 WP_010872369.1 hypothetical protein -
  AOY38_RS06020 (AOY38_06020) - 1285941..1287836 (-) 1896 WP_010872370.1 ABC transporter substrate-binding protein -
  AOY38_RS06025 (AOY38_06025) - 1287805..1288179 (-) 375 WP_231848055.1 hypothetical protein -
  AOY38_RS06030 (AOY38_06030) - 1288462..1289427 (-) 966 WP_010872372.1 DUF362 domain-containing protein -
  AOY38_RS06035 (AOY38_06035) - 1289569..1290030 (+) 462 WP_020861674.1 DUF29 domain-containing protein -
  AOY38_RS06040 (AOY38_06040) - 1290153..1290629 (+) 477 WP_010872374.1 DUF29 domain-containing protein -
  AOY38_RS06045 (AOY38_06045) - 1290704..1291165 (+) 462 WP_010872375.1 DUF29 domain-containing protein -
  AOY38_RS06050 (AOY38_06050) - 1291288..1291752 (+) 465 WP_010872376.1 DUF29 domain-containing protein -
  AOY38_RS06055 (AOY38_06055) - 1291893..1292429 (+) 537 WP_010872377.1 methyltransferase domain-containing protein -
  AOY38_RS06060 (AOY38_06060) - 1292471..1294624 (+) 2154 WP_010872378.1 hypothetical protein -
  AOY38_RS06065 (AOY38_06065) - 1294641..1295453 (-) 813 WP_010872379.1 hypothetical protein -
  AOY38_RS06070 (AOY38_06070) - 1295455..1295967 (-) 513 WP_010872380.1 type II secretion system protein -
  AOY38_RS06075 (AOY38_06075) pilA/pilA1 1296066..1296572 (-) 507 WP_010872381.1 type IV pilin-like G/H family protein Machinery gene
  AOY38_RS06080 (AOY38_06080) - 1296716..1298038 (-) 1323 WP_010872382.1 methyltransferase domain-containing protein -
  AOY38_RS06085 (AOY38_06085) - 1298193..1298798 (+) 606 WP_010872383.1 hypothetical protein -
  AOY38_RS06090 (AOY38_06090) - 1298802..1299239 (-) 438 WP_010872384.1 DUF29 domain-containing protein -
  AOY38_RS06095 (AOY38_06095) - 1299232..1299684 (-) 453 WP_010872385.1 DUF4351 domain-containing protein -
  AOY38_RS06100 (AOY38_06100) - 1299734..1300729 (+) 996 WP_010872386.1 pentapeptide repeat-containing protein -
  AOY38_RS06105 (AOY38_06105) - 1300744..1301853 (-) 1110 WP_010872387.1 RNA polymerase sigma factor, RpoD/SigA family -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 17573.69 Da        Isoelectric Point: 4.4065

>NTDB_id=157831 AOY38_RS06075 WP_010872381.1 1296066..1296572(-) (pilA/pilA1) [Synechocystis sp. PCC 6803 substr. GT-G]
MASNFKFKLLSQLSKKRAEGGFTLIELLVVVIIIGVLAAIALPNLLGQVGKARESEAKSTIGALNRAQQGYFTEKGTFAT
DTETLEVPAPDGNFFSFAVNTADNTEAIQDATALNWEADGTRSMSGGTFYDSGTRAFSTVVCRAEAGSEDTPPTPGGAND
CGGAEVIK

Nucleotide


Download         Length: 507 bp        

>NTDB_id=157831 AOY38_RS06075 WP_010872381.1 1296066..1296572(-) (pilA/pilA1) [Synechocystis sp. PCC 6803 substr. GT-G]
ATGGCTAGTAATTTTAAATTCAAACTCCTCTCTCAACTCTCCAAAAAACGGGCAGAAGGTGGTTTCACCTTAATCGAACT
GCTGGTTGTTGTAATTATTATCGGTGTATTGGCTGCTATTGCTCTGCCTAACCTCTTGGGTCAAGTTGGTAAAGCACGGG
AGTCCGAAGCTAAATCCACTATCGGTGCTTTGAACCGTGCCCAACAAGGTTATTTTACTGAGAAGGGTACGTTTGCAACC
GATACGGAAACGCTTGAAGTCCCAGCTCCTGATGGTAATTTCTTTAGTTTTGCAGTTAACACTGCTGACAACACAGAAGC
TATCCAAGACGCAACGGCATTGAATTGGGAGGCTGACGGCACCCGCTCCATGTCAGGTGGAACGTTTTACGATTCAGGCA
CCCGCGCCTTCAGTACTGTTGTTTGTCGGGCTGAAGCAGGTAGTGAAGATACTCCCCCAACCCCAGGAGGGGCTAATGAT
TGTGGTGGTGCTGAAGTAATTAAATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(17-42)

Type IV pilin-like G and H, putative (Pilin_GH)

(54-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilA1 Synechocystis sp. PCC 6803

100

100

1

Multiple sequence alignment