Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   AOY20_RS02855 Genome accession   NZ_CP012808
Coordinates   603814..604140 (-) Length   108 a.a.
NCBI ID   WP_054580464.1    Uniprot ID   A0A0N9WB38
Organism   Acinetobacter equi strain 114     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 598814..609140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY20_RS02835 (AOY20_02835) - 599054..599782 (-) 729 WP_054580461.1 FHA domain-containing protein -
  AOY20_RS02840 (AOY20_02840) gspD 599903..602059 (-) 2157 WP_081403346.1 type II secretion system secretin GspD -
  AOY20_RS02845 (AOY20_02845) - 602096..602908 (-) 813 WP_054580462.1 type II secretion system protein N -
  AOY20_RS02850 (AOY20_02850) gspN 602908..603648 (-) 741 WP_054580463.1 type II secretion system protein N -
  AOY20_RS02855 (AOY20_02855) hns 603814..604140 (-) 327 WP_054580464.1 H-NS family nucleoid-associated regulatory protein Regulator
  AOY20_RS02860 (AOY20_02860) - 604281..604688 (-) 408 WP_054580465.1 acyl-CoA thioesterase -
  AOY20_RS02865 (AOY20_02865) - 604699..605892 (-) 1194 WP_054580466.1 hypothetical protein -
  AOY20_RS02870 (AOY20_02870) - 605896..606723 (-) 828 WP_054580467.1 hypothetical protein -
  AOY20_RS02875 (AOY20_02875) - 606720..607499 (-) 780 WP_054580468.1 uroporphyrinogen-III synthase -
  AOY20_RS02880 (AOY20_02880) hemC 607501..608418 (-) 918 WP_054582523.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12233.99 Da        Isoelectric Point: 6.4172

>NTDB_id=157742 AOY20_RS02855 WP_054580464.1 603814..604140(-) (hns) [Acinetobacter equi strain 114]
MMPDISNLSVEELKRLQLEAEALIASKKDQAIEDAYNQITQIAENVGLSVDQIMEFGLSKRKKGSRKAVEPRYRSKANEA
DTWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=157742 AOY20_RS02855 WP_054580464.1 603814..604140(-) (hns) [Acinetobacter equi strain 114]
GTGATGCCAGATATTAGTAATTTATCTGTTGAAGAGTTAAAACGTTTACAGCTTGAAGCAGAGGCTTTAATTGCCTCTAA
AAAAGATCAAGCAATTGAAGATGCATATAACCAAATTACACAAATTGCTGAAAATGTTGGTTTAAGTGTTGATCAAATTA
TGGAATTTGGTCTTTCTAAGCGTAAAAAAGGTTCTCGTAAAGCTGTAGAGCCAAGATACCGCAGTAAAGCAAATGAAGCC
GACACTTGGACTGGACGTGGTAAACAACCTCGTTGGTTGGTTGCTGAGTTAGAAAAAGGTGCTAAATTGGAAGACTTCTT
AATTTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0N9WB38

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

81.481

100

0.815

Multiple sequence alignment