Detailed information NTG0157633

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: A9E88_RS06420
• Genome accession: NZ_CP015946
• Coordinates: 1424521..1425546 (+)
• Length: 341 a.a.
• NCBI ID: WP_015444568.1
• Uniprot ID: Q9S4T1
• Organism: Legionella pneumophila strain E1_P
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1419521..1430546

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A9E88_RS06390 (A9E88_06390)	-	1419955..1420272 (+)	318	WP_010947009.1	DUF2845 domain-containing protein	-
A9E88_RS06395 (A9E88_06395)	-	1420309..1420680 (+)	372	WP_010947010.1	protease inhibitor I42 family protein	-
A9E88_RS06400 (A9E88_06400)	-	1420728..1422452 (-)	1725	WP_010947011.1	NAD-dependent malic enzyme	-
A9E88_RS06405 (A9E88_06405)	-	1422532..1422915 (+)	384	WP_010947012.1	hypothetical protein	-
A9E88_RS06410 (A9E88_06410)	surE	1422918..1423673 (+)	756	WP_010947013.1	5'/3'-nucleotidase SurE	-
A9E88_RS06415 (A9E88_06415)	-	1423692..1424435 (+)	744	WP_010947014.1	peptidoglycan DD-metalloendopeptidase family protein	-
A9E88_RS06420 (A9E88_06420)	rpoS	1424521..1425546 (+)	1026	WP_015444568.1	RNA polymerase sigma factor RpoS	Regulator
A9E88_RS06425 (A9E88_06425)	hmgA	1425649..1426899 (-)	1251	WP_010947016.1	homogentisate 1,2-dioxygenase	-
A9E88_RS06430 (A9E88_06430)	-	1427045..1427788 (+)	744	WP_010947017.1	YebC/PmpR family DNA-binding transcriptional regulator	-
A9E88_RS06435 (A9E88_06435)	ruvC	1427788..1428312 (+)	525	WP_010947018.1	crossover junction endodeoxyribonuclease RuvC	-
A9E88_RS06440 (A9E88_06440)	ruvA	1428309..1428908 (+)	600	WP_010947019.1	Holliday junction branch migration protein RuvA	-
A9E88_RS06445 (A9E88_06445)	-	1428958..1429278 (+)	321	WP_010947020.1	hypothetical protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39449.70 Da
• Isoelectric Point: 4.3732

>NTDB_id=157633 A9E88_RS06420 WP_015444568.1 1424521..1425546(+) (rpoS) [Legionella pneumophila strain E1_P]
MQDDEEPIKDKEFKEEEWSEPDDESLLSEEDVEPDIEKMEEELDELPEFTDDETFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=157633 A9E88_RS06420 WP_015444568.1 1424521..1425546(+) (rpoS) [Legionella pneumophila strain E1_P]
ATGCAAGATGATGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGAATCTCTGTT
GTCAGAAGAAGATGTTGAACCTGATATCGAAAAAATGGAAGAAGAGCTTGATGAACTTCCAGAGTTTACTGATGATGAAA
CTTTTCCTTCATTCCAGCGCGGGAAAAATATTGCCAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGTTTT
TCTCCTTTGTTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGATTGCCTCTTCTTGATCTAATCG
AAGAGGGTAACCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGTTTGCCTATTCATGTCGTGAAAGA
ACTTAATGTTTATCTCAGAGCGGCAAGGCAATTGACGCAAAAACTGGATCATGAACCATCACCTGAAGAAATAGCAGAAA
TGGTGGATAAGCCTTTGGAGGATGTCCAAAAATTATTGGGATTGAATGATAAAGTCGCTTCAGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAATGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGACGTTGGTAAGGAAATTGATTTGACCCGAGAACGCGTTCGCCAAATTCAAGTT
GAAGCGTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

3D structure

• AlphaFold DB: Q9S4T1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548