Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   K788_RS01890 Genome accession   NZ_CP012746
Coordinates   425491..427011 (+) Length   506 a.a.
NCBI ID   WP_035986726.1    Uniprot ID   A0A0P0R524
Organism   Paraburkholderia caribensis MBA4     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 420491..432011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K788_RS01865 (K788_0004005) kdsD 421627..422610 (+) 984 WP_035986714.1 arabinose 5-phosphate isomerase KdsD -
  K788_RS01870 (K788_0004006) - 422610..423170 (+) 561 WP_035986716.1 KdsC family phosphatase -
  K788_RS01875 (K788_0004007) lptC 423167..423772 (+) 606 WP_035986719.1 LPS export ABC transporter periplasmic protein LptC -
  K788_RS01880 (K788_0004008) lptA 423794..424471 (+) 678 WP_035986721.1 lipopolysaccharide transport periplasmic protein LptA -
  K788_RS01885 (K788_0004009) lptB 424468..425250 (+) 783 WP_035986723.1 LPS export ABC transporter ATP-binding protein -
  K788_RS01890 (K788_0004010) rpoN/rpoN1 425491..427011 (+) 1521 WP_035986726.1 RNA polymerase factor sigma-54 Machinery gene
  K788_RS01895 (K788_0004011) hpf 427187..427546 (+) 360 WP_012399744.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  K788_RS01905 (K788_0004012) - 427847..428362 (+) 516 WP_035538101.1 PTS sugar transporter subunit IIA -
  K788_RS01910 (K788_0004013) hprK 428595..429563 (+) 969 WP_007579699.1 HPr(Ser) kinase/phosphatase -
  K788_RS01915 (K788_0004014) rapZ 429641..430534 (+) 894 WP_035986732.1 RNase adapter RapZ -
  K788_RS01920 (K788_0004015) - 430599..431234 (+) 636 WP_035986734.1 LON peptidase substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55588.49 Da        Isoelectric Point: 4.8325

>NTDB_id=157538 K788_RS01890 WP_035986726.1 425491..427011(+) (rpoN/rpoN1) [Paraburkholderia caribensis MBA4]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVSMAIAQNPLLETEDDWIASPLRVAADGTVIAQTSQNTSPEEMS
SAPPSSSSSSSSGESQEGGEPQGVDEYNGMGSDANSDANQWNLDDYGRSGNASDDDDLPPLQIHESTTTLRDHLTAQLRV
TGASARDRALITFLIESLDDDGYLTATFDEILADLPEELEVDTDELNAALALLHSFDPAGVGARSASECLRLQLCRLEPS
PTRTLALDIVAHHLELLAARDFTRLRKYLKASDDDLREAHALIRSLEPFPGAAYGKAEADYVVPDIMVRKTAQGWQAELN
PEVVPKLRINHLYANILRNNRGDPGSGSLRQQLQEARWLIKNIQQRFETILRVAQAIVERQKNFFAHGEIAMRPLVLREI
ADTLGLHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDTKSPLSDSRIAELLAEQG
FVVARRTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=157538 K788_RS01890 WP_035986726.1 425491..427011(+) (rpoN/rpoN1) [Paraburkholderia caribensis MBA4]
ATGAAAGCCAGCCTCCAACTTCGCCTGTCGCAGCATCTTGCGCTGACACCACAACTGCAACAGTCCATCCGGCTGCTGCA
GCTGTCTACGCTTGAACTGCAACAGGAAGTGTCGATGGCGATTGCCCAGAATCCGTTGCTCGAAACAGAGGACGACTGGA
TCGCGAGTCCGTTGCGCGTCGCCGCCGACGGCACTGTCATCGCGCAGACCTCGCAGAACACGTCGCCGGAAGAGATGTCG
AGCGCGCCGCCGTCCTCGTCGTCGTCGTCCTCCTCCGGCGAAAGCCAGGAAGGCGGCGAGCCACAGGGCGTGGACGAATA
CAACGGCATGGGTTCGGATGCGAACTCGGACGCCAACCAGTGGAATCTCGACGACTACGGCCGTTCGGGCAACGCATCGG
ACGACGACGATCTGCCGCCGCTGCAAATCCACGAATCGACCACGACGCTGCGCGATCACCTGACTGCTCAACTTCGCGTC
ACGGGAGCAAGCGCACGCGACCGCGCGCTCATCACGTTCCTGATCGAATCACTCGACGACGACGGCTATCTGACGGCCAC
CTTCGACGAAATCCTCGCCGATTTGCCCGAAGAACTGGAAGTCGATACCGACGAACTCAACGCCGCCCTCGCCTTGCTGC
ACAGCTTCGACCCAGCGGGGGTCGGCGCGCGTTCGGCGTCCGAATGCCTGCGTTTGCAGTTGTGCCGGCTCGAGCCGTCG
CCCACGCGCACGCTCGCGCTCGACATCGTCGCGCATCACCTGGAACTGCTCGCCGCACGCGACTTCACGCGACTGCGCAA
ATACCTGAAGGCAAGCGACGACGATCTGCGCGAAGCGCATGCGCTGATCCGCTCGCTGGAGCCGTTCCCCGGTGCGGCCT
ACGGCAAGGCCGAAGCGGACTACGTCGTGCCCGACATCATGGTGCGCAAAACGGCACAGGGATGGCAGGCCGAACTGAAT
CCGGAAGTCGTGCCGAAACTGCGTATCAACCATCTGTACGCGAATATCCTGCGCAACAATCGCGGCGATCCCGGCAGCGG
TTCGCTGCGGCAGCAACTGCAGGAGGCGCGCTGGCTGATCAAGAATATCCAGCAGCGCTTCGAGACGATCCTGCGTGTCG
CACAGGCAATTGTGGAGCGTCAAAAGAACTTTTTCGCCCACGGCGAAATTGCCATGCGCCCCTTGGTTTTGCGGGAAATA
GCTGATACGCTGGGTTTACACGAGTCGACGGTCTCACGTGTGACAACCGGCAAGTACATGCTCACCCCATTCGGGACGCT
TGAATTTAAGTACTTCTTCGGATCGCACGTGTCCACCGACACGGGGGGCGCGGCCTCTTCAACGGCCATTCGCGCACTCA
TCAAGCAACTGATAGGAGCGGAAGACACCAAATCTCCTCTTTCAGACAGCCGCATTGCCGAACTGCTGGCGGAACAGGGT
TTCGTCGTCGCTCGCCGTACCGTTGCGAAATACCGCGAAGCACTGAAAATCCCGGCAGTCAATCTGCGCAAGTCTCTTTA
G

Domains

Predicted by InterProScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(349-504)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(143-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

67.194

100

0.672

Multiple sequence alignment