Detailed information NTG0157495

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: A9E86_RS06190
• Genome accession: NZ_CP015944
• Coordinates: 1382752..1383777 (+)
• Length: 341 a.a.
• NCBI ID: WP_015444568.1
• Uniprot ID: Q9S4T1
• Organism: Legionella pneumophila strain C10_S
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1377752..1388777

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A9E86_RS06160 (A9E86_06160)	-	1378186..1378503 (+)	318	WP_010947009.1	DUF2845 domain-containing protein	-
A9E86_RS06165 (A9E86_06165)	-	1378540..1378911 (+)	372	WP_010947010.1	protease inhibitor I42 family protein	-
A9E86_RS06170 (A9E86_06170)	-	1378959..1380683 (-)	1725	WP_010947011.1	NAD-dependent malic enzyme	-
A9E86_RS06175 (A9E86_06175)	-	1380763..1381146 (+)	384	WP_010947012.1	hypothetical protein	-
A9E86_RS06180 (A9E86_06180)	surE	1381149..1381904 (+)	756	WP_010947013.1	5'/3'-nucleotidase SurE	-
A9E86_RS06185 (A9E86_06185)	-	1381923..1382666 (+)	744	WP_010947014.1	peptidoglycan DD-metalloendopeptidase family protein	-
A9E86_RS06190 (A9E86_06190)	rpoS	1382752..1383777 (+)	1026	WP_015444568.1	RNA polymerase sigma factor RpoS	Regulator
A9E86_RS06195 (A9E86_06195)	hmgA	1383880..1385130 (-)	1251	WP_010947016.1	homogentisate 1,2-dioxygenase	-
A9E86_RS06200 (A9E86_06200)	-	1385276..1386019 (+)	744	WP_010947017.1	YebC/PmpR family DNA-binding transcriptional regulator	-
A9E86_RS06205 (A9E86_06205)	ruvC	1386019..1386543 (+)	525	WP_010947018.1	crossover junction endodeoxyribonuclease RuvC	-
A9E86_RS06210 (A9E86_06210)	ruvA	1386540..1387139 (+)	600	WP_010947019.1	Holliday junction branch migration protein RuvA	-
A9E86_RS06215 (A9E86_06215)	-	1387189..1387509 (+)	321	WP_010947020.1	hypothetical protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39449.70 Da
• Isoelectric Point: 4.3732

>NTDB_id=157495 A9E86_RS06190 WP_015444568.1 1382752..1383777(+) (rpoS) [Legionella pneumophila strain C10_S]
MQDDEEPIKDKEFKEEEWSEPDDESLLSEEDVEPDIEKMEEELDELPEFTDDETFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=157495 A9E86_RS06190 WP_015444568.1 1382752..1383777(+) (rpoS) [Legionella pneumophila strain C10_S]
ATGCAAGATGATGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGAATCTCTGTT
GTCAGAAGAAGATGTTGAACCTGATATCGAAAAAATGGAAGAAGAGCTTGATGAACTTCCAGAGTTTACTGATGATGAAA
CTTTTCCTTCATTCCAGCGCGGGAAAAATATTGCCAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGTTTT
TCTCCTTTGTTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGATTGCCTCTTCTTGATCTAATCG
AAGAGGGTAACCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGTTTGCCTATTCATGTCGTGAAAGA
ACTTAATGTTTATCTCAGAGCGGCAAGGCAATTGACGCAAAAACTGGATCATGAACCATCACCTGAAGAAATAGCAGAAA
TGGTGGATAAGCCTTTGGAGGATGTCCAAAAATTATTGGGATTGAATGATAAAGTCGCTTCAGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAATGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGACGTTGGTAAGGAAATTGATTTGACCCGAGAACGCGTTCGCCAAATTCAAGTT
GAAGCGTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

3D structure

• AlphaFold DB: Q9S4T1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548