Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AOD72_RS17320 Genome accession   NZ_CP012743
Coordinates   3463540..3464136 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae subsp. pneumoniae strain TGH8     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3458540..3469136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOD72_RS17305 (AOD72_17265) helD 3458748..3460802 (-) 2055 WP_014907883.1 DNA helicase IV -
  AOD72_RS17310 (AOD72_17270) - 3460927..3461373 (+) 447 WP_002898425.1 YccF domain-containing protein -
  AOD72_RS17315 (AOD72_17275) yccS 3461391..3463526 (+) 2136 WP_002898422.1 YccS family putative transporter -
  AOD72_RS17320 (AOD72_17280) sxy/tfoX 3463540..3464136 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  AOD72_RS17325 (AOD72_17285) sulA 3464485..3464994 (+) 510 WP_004893150.1 SOS-induced cell division inhibitor SulA -
  AOD72_RS17330 (AOD72_17290) ompA 3465347..3466417 (+) 1071 WP_002898408.1 porin OmpA -
  AOD72_RS17335 (AOD72_17295) matP 3466549..3467001 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  AOD72_RS17340 (AOD72_17300) - 3467187..3468944 (+) 1758 WP_062920818.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=157478 AOD72_RS17320 WP_004179217.1 3463540..3464136(-) (sxy/tfoX) [Klebsiella pneumoniae subsp. pneumoniae strain TGH8]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=157478 AOD72_RS17320 WP_004179217.1 3463540..3464136(-) (sxy/tfoX) [Klebsiella pneumoniae subsp. pneumoniae strain TGH8]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment