Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   A9E85_RS12505 Genome accession   NZ_CP015941
Coordinates   2816273..2816956 (+) Length   227 a.a.
NCBI ID   WP_062724736.1    Uniprot ID   -
Organism   Legionella pneumophila strain C9_S     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2811273..2821956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9E85_RS12490 (A9E85_12490) - 2813126..2814514 (-) 1389 WP_027265358.1 phosphomannomutase/phosphoglucomutase -
  A9E85_RS12495 (A9E85_12495) dut 2814515..2814973 (-) 459 WP_070071249.1 dUTP diphosphatase -
  A9E85_RS12500 (A9E85_12500) coaBC 2815000..2816196 (-) 1197 WP_027265359.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  A9E85_RS12505 (A9E85_12505) radC 2816273..2816956 (+) 684 WP_062724736.1 RadC family protein Machinery gene
  A9E85_RS12515 (A9E85_12515) lepB 2817308..2821192 (+) 3885 WP_070071250.1 Dot/Icm T4SS GTPase-activating effector LepB -
  A9E85_RS12520 (A9E85_12520) thpR 2821315..2821878 (-) 564 WP_010948193.1 RNA 2',3'-cyclic phosphodiesterase -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25748.48 Da        Isoelectric Point: 7.5393

>NTDB_id=157458 A9E85_RS12505 WP_062724736.1 2816273..2816956(+) (radC) [Legionella pneumophila strain C9_S]
MMVAHTAQQLDLREKLLTNGVHSLSDIELLAVFISSGNNKKSCLQLAYELTKHLGNLRNILNADLQSFKSIHGLGEVRYA
QLQAAKEICHRSDFIHLQKEIRLSNTQQTYAFLKKRLRDYKNETFAALFLDNQHRIIAYEELFSGTINTATVYPRPIVER
VLQLNAAALILAHNHPSGLSDASQQDLAITKRIRDALDLVDARLLDHIVIGDNEVYSIFAENKWVCN

Nucleotide


Download         Length: 684 bp        

>NTDB_id=157458 A9E85_RS12505 WP_062724736.1 2816273..2816956(+) (radC) [Legionella pneumophila strain C9_S]
ATGATGGTTGCCCATACAGCGCAACAACTTGACTTGCGCGAAAAATTACTTACTAATGGAGTACATAGCCTCTCTGATAT
CGAATTGTTAGCCGTTTTCATCAGTTCGGGTAACAATAAAAAATCTTGTTTGCAACTAGCCTATGAGCTCACCAAACACT
TGGGAAATTTACGGAATATCCTCAATGCTGATCTGCAAAGCTTTAAATCAATCCATGGATTAGGAGAAGTTCGTTATGCA
CAACTTCAGGCTGCGAAAGAAATATGTCATCGTAGTGATTTCATTCATCTGCAAAAAGAAATCCGGTTATCTAACACGCA
ACAAACTTATGCTTTTTTAAAAAAGCGACTGCGAGACTACAAAAATGAAACTTTTGCCGCACTCTTTCTGGATAACCAAC
ACCGAATCATTGCTTATGAAGAATTATTCTCAGGAACCATCAACACAGCAACAGTCTATCCCAGACCGATTGTAGAACGT
GTATTGCAATTAAATGCTGCTGCTTTAATTCTGGCACATAATCATCCCTCGGGCTTGTCTGATGCAAGCCAGCAAGATCT
AGCCATTACAAAACGCATTCGAGATGCTCTGGACTTGGTAGATGCCCGGTTACTGGATCACATTGTCATTGGAGATAATG
AAGTGTATTCCATTTTTGCTGAGAACAAATGGGTATGTAACTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(104-222)

UPF0758 N-terminal (UPF0758_N)

(13-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

43.578

96.035

0.419