Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   FORC17_RS10255 Genome accession   NZ_CP012739
Coordinates   2218787..2220187 (-) Length   466 a.a.
NCBI ID   WP_065090615.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_017     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2213787..2225187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC17_RS10220 (FORC17_2003) moaE 2214362..2214817 (-) 456 WP_011080885.1 molybdopterin synthase catalytic subunit MoaE -
  FORC17_RS10225 (FORC17_2004) moaD 2214819..2215064 (-) 246 WP_011080886.1 molybdopterin synthase sulfur carrier subunit -
  FORC17_RS10230 (FORC17_2005) moaC 2215061..2215540 (-) 480 WP_011080887.1 cyclic pyranopterin monophosphate synthase MoaC -
  FORC17_RS10235 (FORC17_2006) moaB 2215551..2216063 (-) 513 WP_011080888.1 molybdenum cofactor biosynthesis protein B -
  FORC17_RS10240 (FORC17_2007) moaA 2216144..2217133 (-) 990 WP_065090863.1 GTP 3',8-cyclase MoaA -
  FORC17_RS10245 (FORC17_2008) - 2217449..2218339 (+) 891 WP_011080890.1 YvcK family protein -
  FORC17_RS10250 (FORC17_2009) luxU 2218440..2218787 (-) 348 WP_011080891.1 quorum-sensing phosphorelay protein LuxU -
  FORC17_RS10255 (FORC17_2010) luxO 2218787..2220187 (-) 1401 WP_065090615.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  FORC17_RS10260 (FORC17_2011) uvrB 2220461..2222491 (-) 2031 WP_013572115.1 excinuclease ABC subunit UvrB -
  FORC17_RS10270 (FORC17_2012) rsxA 2223373..2223951 (+) 579 WP_011080895.1 electron transport complex subunit RsxA -
  FORC17_RS10275 (FORC17_2013) rsxB 2223953..2224549 (+) 597 WP_011080896.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 52106.65 Da        Isoelectric Point: 6.2536

>NTDB_id=157447 FORC17_RS10255 WP_065090615.1 2218787..2220187(-) (luxO) [Vibrio vulnificus strain FORC_017]
MQQITTTKQRYLLMVEDTASVAALYRSYLMPLGIDINIVGTGRDAIDSLKHRIPDLILLDLRLPDMTGMDVLHAVKASHP
DVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKASKLKNDADSAGSQNYQGFIGSSQKMQQVYRTI
DSAASSKASIFITGESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGG
TLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRER
GEDVIEIAYSLLGYMSHEEGKNFVRFSQPVIDRFNEYEWPGNVRQLQNVLRNVVVLNNGKEITMDMLPPPLNQPFERKES
VQPDLSELISVRDICPLWLTEKLAIEQAIKACDGNIPRAAGYLDVSPSTIYRKLQAWNEKEEKQKA

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=157447 FORC17_RS10255 WP_065090615.1 2218787..2220187(-) (luxO) [Vibrio vulnificus strain FORC_017]
ATGCAACAAATAACGACAACGAAACAGCGCTACTTGCTGATGGTAGAAGACACCGCTTCTGTCGCAGCACTCTATCGCTC
CTATCTCATGCCATTGGGTATCGATATCAATATCGTGGGTACTGGGCGTGACGCGATAGACAGTTTAAAACATCGCATTC
CAGATCTTATTCTGCTGGATTTACGTCTACCGGACATGACGGGAATGGACGTATTGCATGCAGTGAAAGCAAGTCACCCT
GATGTTCCTATCATTTTCATGACCGCACACGGCTCGATCGATACTGCCGTTGAAGCTATGCGACATGGGTCTCAGGATTT
TCTTATCAAGCCATGCGAAGCGGATCGCTTGAGGGTCACGGTAAACAACGCTATCCGCAAAGCGAGCAAATTGAAGAATG
ATGCGGACAGTGCAGGCAGCCAAAATTATCAAGGCTTTATCGGCAGTAGCCAAAAAATGCAGCAGGTTTATCGCACCATT
GACTCCGCGGCGAGCAGTAAAGCAAGCATCTTTATCACAGGTGAAAGTGGTACAGGTAAAGAGGTGTGCGCAGAAGCCAT
TCATGCGGCCAGTCGACGTGGAGACAAGCCATTTATCGCGATTAACTGTGCTGCAATTCCCAAGGATTTGATTGAAAGCG
AGCTATTTGGTCATGTCAAAGGTGCGTTTACCGGCGCTGCGACCGATCGCCAAGGGGCGGCAGAGCTCGCTGATGGGGGC
ACACTGTTTCTGGATGAGCTGTGTGAAATGGACTTGGATCTGCAAACAAAATTGCTGCGTTTTATCCAAACGGGTACTTT
CCAAAAAGTAGGCTCTTCAAAAATGAAGAGTGTTGACGTGCGTTTTGTGTGCGCGACAAACCGAGACCCTTGGAAAGAGG
TACAAGAAGGGCGCTTTCGTGAAGATTTGTACTACCGACTTTATGTGATTCCACTGCACTTGCCACCACTTCGTGAACGT
GGAGAGGATGTCATCGAGATCGCTTACTCGTTACTGGGTTACATGTCACACGAGGAAGGGAAAAACTTTGTTCGTTTCTC
TCAACCTGTGATAGATCGATTTAACGAATATGAGTGGCCAGGTAATGTGCGTCAGTTACAAAATGTGCTGCGTAATGTCG
TGGTTCTTAACAACGGTAAAGAGATTACCATGGATATGCTGCCGCCTCCTTTGAACCAGCCCTTTGAACGCAAAGAAAGT
GTGCAGCCTGATCTGAGTGAGTTGATTTCCGTCAGGGATATTTGTCCATTGTGGTTGACAGAGAAATTGGCGATTGAACA
AGCGATCAAAGCGTGTGATGGTAACATTCCGAGAGCCGCTGGCTATCTGGATGTCAGCCCGTCAACGATTTATCGCAAGT
TACAGGCGTGGAACGAAAAAGAAGAAAAACAGAAAGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(417-457)

Response regulator receiver domain (Response_reg)

(13-121)

Sigma-54 interaction domain (Sigma54_activat)

(147-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

85.938

96.137

0.826

Multiple sequence alignment