Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FORC17_RS08910 Genome accession   NZ_CP012739
Coordinates   1913668..1915089 (+) Length   473 a.a.
NCBI ID   WP_065090526.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_017     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1908668..1920089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC17_RS08885 (FORC17_1735) cobC 1909351..1909989 (-) 639 WP_065090522.1 alpha-ribazole phosphatase -
  FORC17_RS08890 (FORC17_1736) cobU 1909999..1910559 (-) 561 WP_065090523.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  FORC17_RS08895 (FORC17_1737) - 1910562..1911329 (-) 768 WP_011080623.1 adenosylcobinamide-GDP ribazoletransferase -
  FORC17_RS08900 (FORC17_1738) cobT 1911331..1912359 (-) 1029 WP_065090524.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  FORC17_RS08905 (FORC17_1739) - 1912896..1913594 (+) 699 WP_065090525.1 oxidoreductase -
  FORC17_RS08910 (FORC17_1740) sbcB 1913668..1915089 (+) 1422 WP_065090526.1 exodeoxyribonuclease I Machinery gene
  FORC17_RS08915 (FORC17_1741) - 1915136..1915507 (+) 372 WP_065090527.1 CidA/LrgA family protein -
  FORC17_RS08920 (FORC17_1742) - 1915510..1916187 (+) 678 WP_011080628.1 LrgB family protein -
  FORC17_RS08925 (FORC17_1743) - 1916501..1916893 (+) 393 WP_065090528.1 SulA-like leucine-rich domain-containing protein -
  FORC17_RS08930 (FORC17_1744) - 1917096..1918199 (+) 1104 WP_011080630.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  FORC17_RS08935 (FORC17_1745) - 1918273..1918677 (-) 405 WP_011080631.1 hypothetical protein -
  FORC17_RS08940 (FORC17_1746) - 1918916..1919683 (-) 768 WP_011080632.1 phospholipase A -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54689.91 Da        Isoelectric Point: 5.1722

>NTDB_id=157443 FORC17_RS08910 WP_065090526.1 1913668..1915089(+) (sbcB) [Vibrio vulnificus strain FORC_017]
MQQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVIYCRPPADYLPAPEAALITGITPQKAQKEGLPEP
EFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYSWSWQNGNSRWDLLDVMRACHALRPEGVEWPENEEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPLAWHPTNNNAVIVVDLAKDPQALFDLDADALHERLYTRHDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAAN
IGIDREQCLANLALIRQHPEVREKLVQLFSIEREFEKSHDVDTLLYDGFFSPADKASMDIIRQTDPTHLAALDITFNDKR
IEALLFRYRARNYPWTLDENEQRRWANHCREYFESRIEEYMLNLENLVHEHESDEKKMAILKSVYRYTESLIS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=157443 FORC17_RS08910 WP_065090526.1 1913668..1915089(+) (sbcB) [Vibrio vulnificus strain FORC_017]
ATGCAGCAAGACAATCAGCCCACTTTCTTCTTTTTTGACTATGAGACTTGGGGAACCAGTCCAGCAAAAGATCGCCCATC
GCAATTTGCTGGCGTTCGTACCGATGAAAACTTCAATATCATCGGCGAACCATTGGTGATTTATTGTCGCCCACCTGCCG
ATTATTTACCGGCCCCCGAAGCCGCACTCATTACCGGAATTACGCCGCAAAAAGCGCAGAAAGAAGGCTTACCTGAGCCA
GAATTTATTGCCAAAATCCACGCAGAGTTATCGCGTCCGAACACCACTAGCCTTGGCTACAACAGCATTCGCTTCGATGA
CGAAGTCACGCGTTATACCTGCTATCGCAATTTCCTCGATCCCTATTCATGGAGCTGGCAAAACGGCAATTCACGCTGGG
ATCTGCTTGATGTGATGCGAGCTTGTCACGCATTAAGACCGGAAGGGGTGGAATGGCCGGAAAATGAAGAAGGCTTTACC
AGCTTTAAACTGGAGCACCTTTCTGTGGCCAATGGCATTGAACACAGTAACGCCCATGATGCGATGGCCGATGTGATCGC
CACCATCGAAATGGCGAAAAAAGTCAAAGCCGCGCAACCCAAATTGTTTGATTACTTCTTTAGCATGCGCCATAAGCGTA
AGCTCAATGAGTTGATCGATATTGTTAACATGACCCCTTTGATGCATGTCTCTGGCATGTTAGGCCGAGAATGCCAATAC
ACCAGTTGGATTGTGCCGTTAGCTTGGCACCCGACCAACAACAATGCGGTGATTGTGGTCGACTTAGCCAAAGATCCTCA
AGCCCTCTTTGATTTGGATGCCGATGCGCTGCATGAGCGTCTTTACACTCGTCATGATGAGCTCGGCGATTTATTGCCTG
TGCCAGTTAAATTGGTGCATTTGAATAAGTGCCCGATTTTAGCGCCAGCCAAAACCCTCACAGCGGAGAACGCCGCCAAT
ATCGGCATCGACCGAGAACAATGTTTGGCAAACTTAGCCCTTATTCGCCAGCATCCAGAAGTACGAGAAAAGTTGGTGCA
GCTGTTCTCAATTGAACGCGAGTTCGAGAAAAGTCATGATGTCGATACCCTGTTGTACGACGGTTTCTTCTCGCCTGCCG
ACAAAGCCTCGATGGACATTATCCGCCAAACCGATCCAACGCACCTTGCCGCTTTGGACATCACGTTTAACGATAAACGC
ATCGAGGCGCTGCTGTTTCGCTACCGTGCGCGCAATTACCCATGGACGTTGGATGAGAACGAACAGCGCCGTTGGGCGAA
TCATTGCCGCGAATACTTCGAAAGTCGAATTGAAGAGTACATGCTTAATTTGGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAAATGGCGATATTAAAATCCGTGTACCGCTATACTGAGAGCTTGATCTCATAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

80.297

99.789

0.801

Multiple sequence alignment