Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FORC17_RS02725 Genome accession   NZ_CP012739
Coordinates   556420..556938 (+) Length   172 a.a.
NCBI ID   WP_065090093.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_017     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 551420..561938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC17_RS02715 (FORC17_0472) gshA 554161..555726 (+) 1566 WP_065090091.1 glutamate--cysteine ligase -
  FORC17_RS02720 (FORC17_0473) - 555764..556369 (+) 606 WP_231894825.1 hypothetical protein -
  FORC17_RS02725 (FORC17_0474) luxS 556420..556938 (+) 519 WP_065090093.1 S-ribosylhomocysteine lyase Regulator
  FORC17_RS02730 (FORC17_0475) - 557028..558305 (-) 1278 WP_011079538.1 HlyC/CorC family transporter -
  FORC17_RS02735 (FORC17_0476) - 558392..559186 (-) 795 WP_011079539.1 cytochrome C assembly family protein -
  FORC17_RS02740 (FORC17_0477) ffh 559400..560776 (+) 1377 WP_011079540.1 signal recognition particle protein -
  FORC17_RS02745 (FORC17_0478) rpsP 561044..561292 (+) 249 WP_011079541.1 30S ribosomal protein S16 -
  FORC17_RS02750 (FORC17_0479) rimM 561308..561856 (+) 549 WP_061058912.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18995.86 Da        Isoelectric Point: 5.5703

>NTDB_id=157433 FORC17_RS02725 WP_065090093.1 556420..556938(+) (luxS) [Vibrio vulnificus strain FORC_017]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRKHLNGASVEIIDISP
MGCRTGFYMSLIGEPTEQQVAAAWKASMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAQNILAAGISVNKNDELA
LPEAMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=157433 FORC17_RS02725 WP_065090093.1 556420..556938(+) (luxS) [Vibrio vulnificus strain FORC_017]
ATGCCATTATTAGATAGTTTTACCGTTGACCACACTCGCATGCATGCACCAGCGGTGCGTGTGGCAAAAACCATGCAAAC
GCCAAAAGGCGACACCATTACCGTGTTTGACTTACGTTTCACTGCACCTAACAAAGATATTTTGTCAGAGAAAGGCATTC
ACACTTTGGAGCACCTGTACGCAGGCTTTATGCGTAAGCATCTTAATGGCGCCTCGGTTGAGATCATTGATATCTCACCG
ATGGGCTGTCGTACCGGTTTCTACATGAGTTTGATTGGCGAGCCGACCGAACAACAAGTGGCGGCGGCATGGAAGGCTTC
GATGGAAGATGTGTTGAAAGTGGAAAGCCAAAACAAGATCCCTGAGTTGAACGAGTATCAGTGTGGTACCGCGGCCATGC
ACTCGCTAGATGAAGCGAAGCAAATCGCGCAGAACATTCTGGCAGCAGGAATTTCGGTGAATAAAAACGATGAACTGGCA
TTGCCAGAAGCGATGTTGAAAGAGCTCAAAGTGGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.719

99.419

0.872

Multiple sequence alignment