Detailed information NTG0157430

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FORC17_RS02605
• Genome accession: NZ_CP012739
• Coordinates: 534073..535065 (+)
• Length: 330 a.a.
• NCBI ID: WP_011079521.1
• Uniprot ID: A0A3Q0L3U7
• Organism: Vibrio vulnificus strain FORC_017
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 529073..540065

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC17_RS02570 (FORC17_0451)	ftsB	529104..529385 (+)	282	WP_011079514.1	cell division protein FtsB	-
FORC17_RS02575 (FORC17_0452)	ispD	529385..530098 (+)	714	WP_045618620.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FORC17_RS02580 (FORC17_0453)	ispF	530095..530571 (+)	477	WP_011151152.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FORC17_RS02585 (FORC17_0454)	truD	530607..531650 (+)	1044	WP_011079517.1	tRNA pseudouridine(13) synthase TruD	-
FORC17_RS02590 (FORC17_0455)	surE	531656..532423 (+)	768	WP_011079518.1	5'/3'-nucleotidase SurE	-
FORC17_RS02595 (FORC17_0456)	-	532426..533052 (+)	627	WP_011079519.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
FORC17_RS02600 (FORC17_0457)	-	533096..533992 (+)	897	WP_065090087.1	peptidoglycan DD-metalloendopeptidase family protein	-
FORC17_RS02605 (FORC17_0458)	rpoS	534073..535065 (+)	993	WP_011079521.1	RNA polymerase sigma factor RpoS	Regulator
FORC17_RS02610 (FORC17_0459)	mutS	535141..537702 (-)	2562	WP_039554641.1	DNA mismatch repair protein MutS	-
FORC17_RS02615 (FORC17_0460)	pncC	537786..538289 (+)	504	WP_065090088.1	nicotinamide-nucleotide amidase	-
FORC17_RS02620 (FORC17_0461)	recA	538422..539471 (+)	1050	WP_011079524.1	recombinase RecA	Machinery gene
FORC17_RS02625 (FORC17_0462)	recX	539575..540036 (+)	462	WP_013571129.1	recombination regulator RecX	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38054.13 Da
• Isoelectric Point: 4.5114

>NTDB_id=157430 FORC17_RS02605 WP_011079521.1 534073..535065(+) (rpoS) [Vibrio vulnificus strain FORC_017]
MSISNTVTKVKDFDVNQMDDDFNDDIEINEKEDLTEEKVKLREEFDASNKSLDATQLYLGEIGFSPLLTAEEEVLYARRA
LRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTR
TIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANN
SDPEVSTQDEDMRVSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGQEIGLTRERVRQIQVEGLRRLREVLIKQGLN
MENLFDIDMD

Nucleotide

• Length: 993 bp

>NTDB_id=157430 FORC17_RS02605 WP_011079521.1 534073..535065(+) (rpoS) [Vibrio vulnificus strain FORC_017]
ATGAGTATCAGCAACACAGTCACCAAAGTTAAAGATTTCGATGTTAATCAGATGGATGATGATTTTAACGACGATATCGA
GATTAATGAAAAAGAAGATCTTACCGAAGAAAAAGTCAAACTTCGCGAGGAGTTTGATGCCAGCAACAAGAGCTTAGACG
CGACGCAGCTCTATCTAGGAGAAATTGGCTTTTCTCCACTATTAACCGCAGAAGAAGAAGTGCTTTATGCTCGACGTGCA
TTACGAGGCGATGAAGCCGCGCGTAAACGTATGATTGAAAGTAACTTACGTCTAGTGGTTAAGATTTCCCGCCGTTACAG
TAATCGCGGTTTGGCACTGCTTGATTTGATTGAAGAGGGTAACCTTGGTTTGATCCGTGCGGTAGAGAAATTCGATCCAG
AGCGTGGTTTCCGCTTCTCGACTTACGCAACATGGTGGATTCGCCAAACCATCGAACGTGCTTTAATGAATCAGACTCGA
ACCATCCGTTTACCTATCCATGTTGTTAAAGAGCTGAACATTTATCTACGTACGGCGCGTGAGCTTTCTCAAAAACTCGA
TCATGAGCCAACCGCTGAAGAGATCGCTGCGCAACTGGATATTCCGGTTGACGATGTGAGCAAAATGCTGCGTTTGAACG
AGCGCATTAGCTCTGTCGATACGCCGATTGGTGGAGATGGAGAGAAGGCGTTATTGGATATTATTCCTGATGCAAACAAC
TCAGACCCAGAGGTTTCAACGCAAGATGAAGACATGCGTGTTTCCTTGATTCATTGGTTGGAAGAGCTCAATCCGAAACA
AAAAGAAGTGTTGGCACGTCGCTTTGGTTTGTTGGGCTATGAGCCTTCAACACTGGAAGAAGTTGGGCAAGAGATTGGTT
TAACTCGTGAGCGAGTGCGCCAGATTCAGGTTGAAGGGTTACGTCGCCTCCGTGAAGTTCTGATCAAACAAGGTCTGAAT
ATGGAAAATTTGTTTGATATCGATATGGATTGA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (171-244)

• Sigma-70, region 4 (Sigma70_r4) (259-312)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (53-86)

• Sigma-70 region 2 (Sigma70_r2) (91-160)

3D structure

• AlphaFold DB: A0A3Q0L3U7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.899	100	0.836