Detailed information NTG0157288

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: A9E83_RS06175
• Genome accession: NZ_CP015938
• Coordinates: 1373843..1374868 (+)
• Length: 341 a.a.
• NCBI ID: WP_015444568.1
• Uniprot ID: Q9S4T1
• Organism: Legionella pneumophila strain C7_O
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1368843..1379868

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A9E83_RS06145 (A9E83_06145)	-	1369277..1369594 (+)	318	WP_010947009.1	DUF2845 domain-containing protein	-
A9E83_RS06150 (A9E83_06150)	-	1369631..1370002 (+)	372	WP_010947010.1	protease inhibitor I42 family protein	-
A9E83_RS06155 (A9E83_06155)	-	1370050..1371774 (-)	1725	WP_010947011.1	NAD-dependent malic enzyme	-
A9E83_RS06160 (A9E83_06160)	-	1371854..1372237 (+)	384	WP_010947012.1	hypothetical protein	-
A9E83_RS06165 (A9E83_06165)	surE	1372240..1372995 (+)	756	WP_010947013.1	5'/3'-nucleotidase SurE	-
A9E83_RS06170 (A9E83_06170)	-	1373014..1373757 (+)	744	WP_010947014.1	peptidoglycan DD-metalloendopeptidase family protein	-
A9E83_RS06175 (A9E83_06175)	rpoS	1373843..1374868 (+)	1026	WP_015444568.1	RNA polymerase sigma factor RpoS	Regulator
A9E83_RS06180 (A9E83_06180)	hmgA	1374971..1376221 (-)	1251	WP_010947016.1	homogentisate 1,2-dioxygenase	-
A9E83_RS06185 (A9E83_06185)	-	1376367..1377110 (+)	744	WP_010947017.1	YebC/PmpR family DNA-binding transcriptional regulator	-
A9E83_RS06190 (A9E83_06190)	ruvC	1377110..1377634 (+)	525	WP_010947018.1	crossover junction endodeoxyribonuclease RuvC	-
A9E83_RS06195 (A9E83_06195)	ruvA	1377631..1378230 (+)	600	WP_010947019.1	Holliday junction branch migration protein RuvA	-
A9E83_RS06200 (A9E83_06200)	-	1378280..1378600 (+)	321	WP_010947020.1	hypothetical protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39449.70 Da
• Isoelectric Point: 4.3732

>NTDB_id=157288 A9E83_RS06175 WP_015444568.1 1373843..1374868(+) (rpoS) [Legionella pneumophila strain C7_O]
MQDDEEPIKDKEFKEEEWSEPDDESLLSEEDVEPDIEKMEEELDELPEFTDDETFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=157288 A9E83_RS06175 WP_015444568.1 1373843..1374868(+) (rpoS) [Legionella pneumophila strain C7_O]
ATGCAAGATGATGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGAATCTCTGTT
GTCAGAAGAAGATGTTGAACCTGATATCGAAAAAATGGAAGAAGAGCTTGATGAACTTCCAGAGTTTACTGATGATGAAA
CTTTTCCTTCATTCCAGCGCGGGAAAAATATTGCCAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGTTTT
TCTCCTTTGTTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGATTGCCTCTTCTTGATCTAATCG
AAGAGGGTAACCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGTTTGCCTATTCATGTCGTGAAAGA
ACTTAATGTTTATCTCAGAGCGGCAAGGCAATTGACGCAAAAACTGGATCATGAACCATCACCTGAAGAAATAGCAGAAA
TGGTGGATAAGCCTTTGGAGGATGTCCAAAAATTATTGGGATTGAATGATAAAGTCGCTTCAGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAATGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGACGTTGGTAAGGAAATTGATTTGACCCGAGAACGCGTTCGCCAAATTCAAGTT
GAAGCGTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

3D structure

• AlphaFold DB: Q9S4T1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548