Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   A9E81_RS12535 Genome accession   NZ_CP015936
Coordinates   2824167..2824850 (+) Length   227 a.a.
NCBI ID   WP_010948191.1    Uniprot ID   Q5ZSM8
Organism   Legionella pneumophila strain C5_P     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2819167..2829850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9E81_RS12520 (A9E81_12520) - 2821020..2822408 (-) 1389 WP_010948188.1 phosphomannomutase/phosphoglucomutase -
  A9E81_RS12525 (A9E81_12525) dut 2822409..2822867 (-) 459 WP_014842515.1 dUTP diphosphatase -
  A9E81_RS12530 (A9E81_12530) coaBC 2822894..2824090 (-) 1197 WP_015444059.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  A9E81_RS12535 (A9E81_12535) radC 2824167..2824850 (+) 684 WP_010948191.1 RadC family protein Machinery gene
  A9E81_RS12540 (A9E81_12540) - 2824886..2825122 (+) 237 WP_015444058.1 hypothetical protein -
  A9E81_RS12545 (A9E81_12545) lepB 2825202..2829086 (+) 3885 WP_010948192.1 Dot/Icm T4SS GTPase-activating effector LepB -
  A9E81_RS12550 (A9E81_12550) thpR 2829209..2829772 (-) 564 WP_010948193.1 RNA 2',3'-cyclic phosphodiesterase -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25749.42 Da        Isoelectric Point: 7.0185

>NTDB_id=157182 A9E81_RS12535 WP_010948191.1 2824167..2824850(+) (radC) [Legionella pneumophila strain C5_P]
MMVAHTAQQLDLREKLLTNGVHSLSDIELLAVFISSGNNKKSCLQLAYELTKHLGNLRNILNADLQSFKSIHGLGEVRYA
QLQAAKEICHRSDFIHLQKEIRLSNTQQTYAFLKKRLRDYKNETFAALFLDNQHRIIAYEELFSGTINTATVYPRPIVER
VLQLNAAALILAHNHPSGLSDASQQDLAITERIRDALDLVDARLLDHIVIGDNEVYSIFAENKWVCN

Nucleotide


Download         Length: 684 bp        

>NTDB_id=157182 A9E81_RS12535 WP_010948191.1 2824167..2824850(+) (radC) [Legionella pneumophila strain C5_P]
ATGATGGTTGCCCATACAGCGCAGCAACTTGACTTGCGCGAAAAACTACTTACTAATGGAGTACATAGCCTCTCTGATAT
TGAATTGTTAGCCGTTTTCATCAGTTCGGGTAACAATAAAAAATCTTGTTTGCAACTAGCCTATGAGCTCACCAAACACT
TGGGAAATTTACGTAATATCCTCAATGCTGATCTGCAAAGCTTTAAATCAATCCATGGATTAGGAGAGGTTCGTTATGCA
CAACTTCAGGCTGCGAAAGAAATATGTCATCGAAGTGATTTTATTCATCTGCAAAAAGAAATCCGGTTATCTAACACACA
ACAAACTTATGCTTTTTTAAAAAAACGACTGCGAGACTACAAAAATGAAACTTTTGCCGCACTCTTTCTGGATAACCAAC
ACCGAATTATTGCTTATGAAGAATTATTCTCAGGAACCATCAACACGGCAACAGTCTATCCCAGACCGATTGTAGAACGT
GTATTGCAATTAAATGCTGCTGCTTTAATTCTGGCACATAATCATCCCTCGGGCTTGTCTGATGCAAGCCAGCAAGATTT
AGCCATTACAGAACGCATTCGAGATGCTCTGGATTTGGTAGATGCCCGGTTACTGGATCACATTGTCATTGGGGATAATG
AAGTGTATTCCATTTTTGCTGAGAACAAATGGGTATGTAACTAG

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(13-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5ZSM8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

43.119

96.035

0.414