Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR/comR2   Type   Regulator
Locus tag   SanJ4206_RS08785 Genome accession   NZ_CP012719
Coordinates   1811262..1811735 (-) Length   157 a.a.
NCBI ID   WP_022525389.1    Uniprot ID   -
Organism   Streptococcus anginosus strain J4206     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1806262..1816735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SanJ4206_RS08770 (SanJ4206_1707c) tsf 1809120..1810163 (-) 1044 WP_003026508.1 translation elongation factor Ts -
  SanJ4206_RS08775 (SanJ4206_1708c) rpsB 1810245..1811027 (-) 783 WP_022525388.1 30S ribosomal protein S2 -
  SanJ4206_RS08785 (SanJ4206_1709c) comR/comR2 1811262..1811735 (-) 474 WP_022525389.1 sigma-70 family RNA polymerase sigma factor Regulator
  SanJ4206_RS08790 (SanJ4206_1710c) rplQ 1812144..1812530 (-) 387 WP_003026513.1 50S ribosomal protein L17 -
  SanJ4206_RS08795 (SanJ4206_1711c) - 1812542..1813480 (-) 939 WP_003029466.1 DNA-directed RNA polymerase subunit alpha -
  SanJ4206_RS08800 (SanJ4206_1712c) rpsK 1813525..1813908 (-) 384 WP_001118385.1 30S ribosomal protein S11 -
  SanJ4206_RS08805 (SanJ4206_1713c) rpsM 1813928..1814293 (-) 366 WP_002262317.1 30S ribosomal protein S13 -
  SanJ4206_RS08810 (SanJ4206_1714c) rpmJ 1814309..1814425 (-) 117 WP_001808836.1 50S ribosomal protein L36 -
  SanJ4206_RS08815 (SanJ4206_1715c) infA 1814450..1814668 (-) 219 WP_001029883.1 translation initiation factor IF-1 -
  SanJ4206_RS08820 (SanJ4206_1716c) - 1814784..1815422 (-) 639 WP_003029467.1 adenylate kinase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 19243.05 Da        Isoelectric Point: 7.9719

>NTDB_id=156801 SanJ4206_RS08785 WP_022525389.1 1811262..1811735(-) (comR/comR2) [Streptococcus anginosus strain J4206]
MEFKELYGKVRGSVLKCRRDYYVHLWELSDWDQEGMLVLYQLVSRYPQLVESESQLYVYYKTKFRNHILDILRKQESQKR
KLDRQAYEEVSEIGHKLSLKELYLDELVILRDQLKSYQAQLSLEKQEQYERLLADERFKGRQAMIRELRVYLKDYSD

Nucleotide


Download         Length: 474 bp        

>NTDB_id=156801 SanJ4206_RS08785 WP_022525389.1 1811262..1811735(-) (comR/comR2) [Streptococcus anginosus strain J4206]
ATGGAGTTCAAGGAGTTGTATGGGAAGGTAAGGGGGAGTGTATTAAAGTGCCGTCGGGATTATTATGTTCACCTGTGGGA
ATTAAGCGATTGGGACCAAGAGGGCATGTTAGTACTCTATCAGTTGGTGAGTCGCTATCCGCAGCTGGTAGAGTCAGAAA
GTCAGCTCTATGTTTACTATAAGACCAAGTTCCGCAATCATATCCTGGACATCCTCCGTAAACAGGAAAGCCAAAAACGC
AAACTGGACCGTCAAGCTTATGAAGAAGTGAGCGAGATTGGTCACAAGCTCAGTCTAAAAGAACTGTATTTGGATGAATT
GGTGATTCTCCGAGACCAGCTAAAGAGCTATCAAGCTCAACTGAGCCTAGAGAAACAAGAGCAGTACGAGCGCTTACTAG
CTGATGAACGGTTCAAAGGCCGCCAAGCTATGATTCGAGAATTAAGGGTCTACTTAAAGGACTATAGCGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

59.615

99.363

0.592
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

59.615

99.363

0.592
  comX/comX1 Streptococcus pneumoniae Rx1

53.896

98.089

0.529
  comX/comX2 Streptococcus pneumoniae D39

53.896

98.089

0.529
  comX/comX1 Streptococcus pneumoniae D39

53.896

98.089

0.529
  comX/comX2 Streptococcus pneumoniae R6

53.896

98.089

0.529
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

53.896

98.089

0.529
  comX/comX1 Streptococcus pneumoniae R6

53.896

98.089

0.529
  comX/comX2 Streptococcus pneumoniae Rx1

53.896

98.089

0.529
  comX/comX2 Streptococcus pneumoniae TIGR4

53.247

98.089

0.522
  comX/comX1 Streptococcus pneumoniae TIGR4

53.247

98.089

0.522
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

53.247

98.089

0.522
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

52.597

98.089

0.516
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

52.288

97.452

0.51
  comX/sigX Streptococcus mutans UA159

48.077

99.363

0.478
  comX/sigX Streptococcus suis D9

45.806

98.726

0.452
  comX/sigX Streptococcus suis isolate S10

45.806

98.726

0.452
  comX/sigX Streptococcus suis P1/7

45.806

98.726

0.452
  comX Streptococcus salivarius SK126

43.506

98.089

0.427
  comX/sigX Streptococcus salivarius strain HSISS4

42.857

98.089

0.42
  comX Streptococcus thermophilus LMG 18311

42.857

98.089

0.42
  comX Streptococcus thermophilus LMD-9

42.857

98.089

0.42
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

41.667

99.363

0.414
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

41.667

99.363

0.414
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

41.667

99.363

0.414
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

41.667

99.363

0.414
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

41.667

99.363

0.414
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

41.667

99.363

0.414
  comX Streptococcus sobrinus strain NIDR 6715-7

39.869

97.452

0.389
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

37.821

99.363

0.376

Multiple sequence alignment