Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SanJ4206_RS02310 Genome accession   NZ_CP012719
Coordinates   461026..461736 (-) Length   236 a.a.
NCBI ID   WP_022525174.1    Uniprot ID   -
Organism   Streptococcus anginosus strain J4206     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 456026..466736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SanJ4206_RS02295 (SanJ4206_0417) - 456424..457548 (+) 1125 WP_003028351.1 AI-2E family transporter -
  SanJ4206_RS02300 (SanJ4206_0418) - 457770..459419 (+) 1650 WP_106382580.1 phosphoenolpyruvate carboxykinase (ATP) -
  SanJ4206_RS02305 (SanJ4206_0419) - 459533..460873 (+) 1341 WP_003028348.1 hemolysin family protein -
  SanJ4206_RS02310 (SanJ4206_0420c) treR 461026..461736 (-) 711 WP_022525174.1 trehalose operon repressor Regulator
  SanJ4206_RS02315 (SanJ4206_0421) treP 461914..463926 (+) 2013 WP_003028346.1 PTS system trehalose-specific EIIBC component -
  SanJ4206_RS02320 (SanJ4206_0422) treC 464133..465764 (+) 1632 WP_022525175.1 alpha,alpha-phosphotrehalase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27642.67 Da        Isoelectric Point: 9.2637

>NTDB_id=156768 SanJ4206_RS02310 WP_022525174.1 461026..461736(-) (treR) [Streptococcus anginosus strain J4206]
MKKYEQIFKLLEQDILNEKYQMNDYLPSEHELVQTYKVSRDTIRKSLDLLQKAGLIQKMRGQGSKVIQQEQIDFPVSNLT
SYQELVRQHGMNSKTNVIQLEKITVDKKLSSLTGFPEYRLVWRIIRQRVVDGIASVLDIDYLDKSFVPSISREIAEHSIY
AYLEDELGLHISYAQKEITIDPATNRDKILMNIGNDHHVVSVKSKVYLADGQQFQFTDSRHKLEKFRFVDFSKRQK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=156768 SanJ4206_RS02310 WP_022525174.1 461026..461736(-) (treR) [Streptococcus anginosus strain J4206]
ATGAAAAAATATGAACAAATTTTTAAACTCTTAGAACAAGATATTCTAAACGAGAAATATCAGATGAATGATTATCTTCC
TAGCGAACACGAACTTGTCCAGACCTACAAGGTCAGCCGTGACACGATTCGTAAATCGCTTGATTTGCTTCAAAAAGCTG
GTCTCATTCAAAAAATGAGAGGTCAAGGCTCTAAAGTCATCCAACAAGAACAGATTGACTTTCCCGTTTCCAACCTAACT
AGTTACCAAGAACTTGTCCGGCAACATGGAATGAATTCTAAAACCAATGTCATACAGTTAGAAAAAATTACAGTTGATAA
AAAATTATCCAGTCTTACTGGTTTTCCTGAATACCGTCTGGTGTGGCGGATTATTCGCCAAAGGGTCGTTGACGGGATTG
CCTCCGTCTTGGATATTGATTACCTTGATAAGAGTTTTGTCCCTTCTATTAGCCGTGAAATTGCAGAGCATTCAATTTAT
GCTTATTTAGAAGATGAACTGGGACTACACATTTCTTACGCCCAAAAAGAAATCACAATTGATCCAGCCACCAATCGCGA
TAAAATATTGATGAACATTGGAAATGACCACCATGTCGTCTCTGTCAAATCCAAAGTTTATCTTGCAGACGGACAGCAAT
TTCAGTTTACAGATAGTCGTCATAAACTCGAAAAATTCCGTTTCGTTGACTTTTCCAAACGGCAAAAATGA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(89-227)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

64.831

100

0.648

Multiple sequence alignment