Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   SanJ4206_RS02195 Genome accession   NZ_CP012719
Coordinates   437322..437981 (-) Length   219 a.a.
NCBI ID   WP_037593429.1    Uniprot ID   A0AAI9J8U9
Organism   Streptococcus anginosus strain J4206     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 432322..442981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SanJ4206_RS02165 (SanJ4206_0393) sepM 432778..433833 (+) 1056 WP_003028378.1 SepM family pheromone-processing serine protease Regulator
  SanJ4206_RS02170 (SanJ4206_0394) - 433973..434536 (+) 564 WP_003043206.1 YutD family protein -
  SanJ4206_RS02175 (SanJ4206_0395) rlmN 434570..435652 (+) 1083 WP_022525296.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  SanJ4206_RS02180 (SanJ4206_0396) - 435645..436175 (+) 531 WP_003028375.1 VanZ family protein -
  SanJ4206_RS02185 - 436564..437001 (-) 438 Protein_389 ISL3 family transposase -
  SanJ4206_RS02190 - 436998..437159 (+) 162 Protein_390 tryptophan synthase subunit beta -
  SanJ4206_RS02195 (SanJ4206_0398c) cclA/cilC 437322..437981 (-) 660 WP_037593429.1 prepilin peptidase Machinery gene
  SanJ4206_RS02200 (SanJ4206_0399) - 438135..438662 (+) 528 WP_003028371.1 Dps family protein -
  SanJ4206_RS02205 (SanJ4206_0400) - 438936..439160 (+) 225 WP_003025724.1 YqgQ family protein -
  SanJ4206_RS02210 (SanJ4206_0401) - 439154..439534 (+) 381 WP_003028370.1 rhodanese-like domain-containing protein -
  SanJ4206_RS02215 (SanJ4206_0402c) - 439555..440280 (-) 726 WP_022525295.1 16S rRNA pseudouridine(516) synthase -
  SanJ4206_RS02220 (SanJ4206_0403) typA 440457..442298 (+) 1842 WP_022525294.1 translational GTPase TypA -
  SanJ4206_RS02225 (SanJ4206_0404) - 442363..442647 (+) 285 WP_003028366.1 DUF3165 family protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24859.30 Da        Isoelectric Point: 8.2271

>NTDB_id=156767 SanJ4206_RS02195 WP_037593429.1 437322..437981(-) (cclA/cilC) [Streptococcus anginosus strain J4206]
MIHFYFFLVGSIVASFLGLVVDRFPEQSILVPSSHCNACGQKLAPRDLVPVLSQLINRLRCRFCQSKIPIRYLILELVGS
LLFLATSLSYLTISQLVLLIMGITLALYDQREQEYPILIWLFFHLLLLFLVGFNLLMISFLALGIVAFFFDLRIGAGDFL
FLSSCSTVFKLTEILWLIQIASLVGLCLFCFKKRKDRIAFVPCLLIGVIVLLLCELLLQ

Nucleotide


Download         Length: 660 bp        

>NTDB_id=156767 SanJ4206_RS02195 WP_037593429.1 437322..437981(-) (cclA/cilC) [Streptococcus anginosus strain J4206]
ATGATTCATTTTTATTTTTTCTTGGTTGGAAGCATTGTGGCTTCCTTTTTAGGGCTGGTCGTTGATCGTTTCCCTGAACA
GTCTATTCTCGTTCCTTCCAGTCATTGTAATGCTTGTGGACAGAAATTAGCACCTCGCGATTTAGTCCCTGTCCTTTCTC
AGCTTATCAATCGACTGCGTTGTCGGTTTTGTCAGTCAAAAATTCCCATTCGCTACTTGATATTAGAGTTGGTAGGTAGT
TTACTCTTTCTCGCAACTTCCTTAAGCTACTTAACTATCAGCCAACTTGTCTTGCTCATAATGGGAATTACACTAGCTCT
TTATGATCAAAGAGAACAGGAATATCCTATCCTCATTTGGTTGTTCTTTCATCTTCTTCTCCTATTTTTGGTAGGTTTTA
ATCTTCTAATGATTAGTTTTTTAGCCCTTGGAATAGTAGCTTTTTTCTTTGACTTACGAATTGGCGCAGGAGACTTTCTT
TTTCTATCTTCTTGTTCAACTGTTTTCAAGTTGACAGAGATTCTTTGGCTGATTCAAATTGCCAGCTTAGTGGGCTTATG
TCTCTTTTGCTTCAAAAAAAGAAAAGACAGGATAGCTTTCGTTCCCTGTCTTTTGATTGGAGTGATTGTTCTGCTTTTAT
GCGAACTGTTGCTTCAATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis NCTC 12261

55.046

99.543

0.548
  cclA/cilC Streptococcus mitis SK321

55.046

99.543

0.548
  cclA/cilC Streptococcus pneumoniae Rx1

55.046

99.543

0.548
  cclA/cilC Streptococcus pneumoniae D39

55.046

99.543

0.548
  cclA/cilC Streptococcus pneumoniae R6

55.046

99.543

0.548
  cclA/cilC Streptococcus pneumoniae TIGR4

54.128

99.543

0.539

Multiple sequence alignment