Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AOT13_RS16440 Genome accession   NZ_CP012712
Coordinates   3342613..3344334 (-) Length   573 a.a.
NCBI ID   WP_042383525.1    Uniprot ID   Q6E1N9
Organism   Parageobacillus thermoglucosidasius strain DSM 2542     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3337613..3349334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOT13_RS16425 (AOT13_16405) - 3338957..3339938 (-) 982 Protein_3236 tyrosine-type recombinase/integrase -
  AOT13_RS16430 (AOT13_16410) spo0A 3340099..3340878 (-) 780 WP_003249276.1 sporulation transcription factor Spo0A -
  AOT13_RS16435 (AOT13_16415) spoIVB 3341193..3342485 (-) 1293 WP_003249274.1 SpoIVB peptidase -
  AOT13_RS16440 (AOT13_16420) recN 3342613..3344334 (-) 1722 WP_042383525.1 DNA repair protein RecN Machinery gene
  AOT13_RS16445 (AOT13_16425) argR 3344353..3344802 (-) 450 WP_003249270.1 transcriptional regulator ArgR -
  AOT13_RS16450 (AOT13_16430) - 3344857..3345687 (-) 831 WP_003249269.1 TlyA family RNA methyltransferase -
  AOT13_RS16455 (AOT13_16435) dxs 3345691..3347583 (-) 1893 WP_003249266.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AOT13_RS16460 (AOT13_16440) - 3347800..3348693 (-) 894 WP_042383522.1 polyprenyl synthetase family protein -
  AOT13_RS16465 (AOT13_16445) - 3348697..3348930 (-) 234 WP_003249261.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 64697.79 Da        Isoelectric Point: 4.7877

>NTDB_id=156706 AOT13_RS16440 WP_042383525.1 3342613..3344334(-) (recN) [Parageobacillus thermoglucosidasius strain DSM 2542]
MLAELSIKNFAIIESLSVSFDKGLTVLTGETGAGKSIIIDAIQLLIGGRGSAEFVRYGEEKAEIEGLFLLDNENHPCYDK
CAEVGIDISEGMVVLRREIFANGKSVCRVNGKLVTTAILRDIGSTLVDIHGQHEHQELMDPSRHLPLLDEYGGEEIAAAL
EEYRAVYEKYEQLRKKLKKLNENEQQMAHRLDLLTFQLDEIQKANLQVNEDEQLMEEKVKIMNFQKIYEALKHSYEALSG
EHRGLDWIGLAMSHLEDVTSISPALKEAYETIANSYYLLEDITYKLSDELEQLEYDPARLDFIESRLSEINQLKRKYGAT
IEEILQYAEKIAEEIDELQHRETHIHELQKELKSVTEDLLIEAKNVTNVRQKYAKMLINHIHQELKDLYMEKTQFDIVFT
KREGTLDAPLLDGVPVNFHEDGVDEVEFYISTNVGEPLKPLAKIASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVS
GRVAQAIAEKIYRVSIGSQVLCISHLPQVAAMADTHLFIAKETDGNRTRTSVKTLSDEEKVKEIGRMISGVEITELTKQH
AKELLELAAKIKG

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=156706 AOT13_RS16440 WP_042383525.1 3342613..3344334(-) (recN) [Parageobacillus thermoglucosidasius strain DSM 2542]
TTGCTTGCGGAATTATCCATAAAAAATTTTGCGATTATTGAATCGTTGTCGGTTTCGTTTGACAAAGGGCTGACCGTGCT
GACCGGGGAAACAGGAGCGGGGAAGTCGATTATTATTGACGCCATCCAGCTGCTGATCGGCGGGCGCGGTTCGGCGGAAT
TTGTCCGCTATGGGGAAGAAAAGGCGGAAATAGAAGGGCTTTTTTTATTGGATAATGAAAACCATCCATGCTATGACAAA
TGTGCGGAAGTCGGCATCGATATTAGCGAAGGCATGGTTGTTTTGCGTCGCGAAATTTTCGCGAATGGAAAAAGCGTGTG
CCGCGTCAATGGAAAATTAGTGACAACAGCGATATTGCGCGATATCGGTTCAACGCTTGTCGATATTCACGGCCAGCATG
AACACCAGGAATTGATGGATCCGTCGCGCCATCTTCCGCTGCTCGATGAATATGGGGGAGAGGAAATTGCCGCCGCGCTG
GAAGAATACCGGGCTGTTTATGAGAAATATGAGCAATTGCGGAAGAAATTGAAAAAGCTGAATGAAAATGAGCAGCAAAT
GGCCCATCGCCTTGATTTATTAACATTTCAGCTCGATGAAATTCAAAAAGCAAATTTGCAAGTAAATGAAGATGAACAAC
TAATGGAAGAAAAAGTAAAAATTATGAACTTCCAAAAAATTTATGAGGCGCTTAAACATAGCTATGAGGCGTTATCCGGT
GAACACCGCGGGCTTGACTGGATTGGTCTGGCCATGAGCCATTTAGAAGATGTCACCTCTATCAGCCCGGCATTGAAAGA
AGCGTACGAAACGATTGCGAATAGTTATTATTTATTAGAGGATATTACGTATAAATTGAGCGATGAACTTGAACAATTAG
AGTATGACCCGGCCCGCCTCGATTTTATTGAAAGCCGTCTTAGCGAAATTAATCAGTTAAAACGGAAATACGGAGCGACC
ATCGAAGAGATTTTGCAATATGCTGAAAAAATTGCGGAAGAAATCGATGAACTCCAACATCGCGAAACCCATATCCATGA
ACTGCAAAAAGAATTGAAATCGGTGACGGAAGATTTATTAATCGAAGCGAAAAACGTGACGAACGTCCGCCAAAAATACG
CAAAAATGTTAATTAACCATATTCATCAAGAATTAAAAGATCTATACATGGAAAAAACGCAATTTGATATCGTATTTACG
AAAAGAGAAGGAACGCTCGATGCGCCGCTGCTGGACGGCGTGCCTGTGAATTTTCATGAAGATGGCGTCGATGAGGTGGA
ATTTTACATTTCTACCAACGTGGGCGAACCGTTAAAACCGCTGGCGAAAATTGCTTCCGGCGGCGAATTGTCGCGCATTA
TGCTCGCGTTAAAAAGCATATTTTCGAAACATCAAGGCGTTACGTCCATTATTTTTGATGAAGTCGATACAGGCGTCAGC
GGCCGGGTTGCGCAGGCGATTGCTGAAAAAATTTACCGCGTCTCGATTGGCTCGCAAGTGCTTTGTATTTCCCATTTGCC
GCAAGTAGCGGCGATGGCGGATACGCATTTGTTTATTGCAAAGGAAACGGACGGAAATCGGACAAGAACATCAGTAAAAA
CATTATCGGACGAAGAAAAAGTAAAAGAAATCGGCCGAATGATTTCCGGGGTGGAAATTACAGAACTAACAAAGCAACAT
GCAAAAGAGCTGCTGGAGCTAGCGGCAAAAATCAAAGGATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6E1N9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

63.763

100

0.639

Multiple sequence alignment