Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AOT13_RS07430 Genome accession   NZ_CP012712
Coordinates   1500392..1502206 (+) Length   604 a.a.
NCBI ID   WP_003252325.1    Uniprot ID   A0AB38R177
Organism   Parageobacillus thermoglucosidasius strain DSM 2542     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1495392..1507206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOT13_RS07410 (AOT13_07400) - 1495814..1496485 (-) 672 WP_013401446.1 TerC family protein -
  AOT13_RS07415 (AOT13_07405) mecA 1496701..1497378 (+) 678 WP_003252330.1 adaptor protein MecA -
  AOT13_RS07420 (AOT13_07410) cls 1497452..1498960 (+) 1509 WP_003252328.1 cardiolipin synthase -
  AOT13_RS07425 (AOT13_07415) - 1499078..1500310 (+) 1233 WP_042383588.1 competence protein CoiA family protein -
  AOT13_RS07430 (AOT13_07420) pepF 1500392..1502206 (+) 1815 WP_003252325.1 oligoendopeptidase F Regulator
  AOT13_RS07435 (AOT13_07425) - 1502227..1502421 (-) 195 WP_003252322.1 hypothetical protein -
  AOT13_RS07440 (AOT13_07430) spxH 1502677..1503570 (-) 894 WP_003252320.1 ClpXP adapter protein SpxH -
  AOT13_RS07445 (AOT13_07435) - 1503563..1503976 (-) 414 WP_013401443.1 globin -
  AOT13_RS07450 (AOT13_07440) - 1504082..1504684 (-) 603 WP_013401442.1 lytic transglycosylase domain-containing protein -
  AOT13_RS07455 (AOT13_07445) - 1504684..1505274 (-) 591 WP_013401441.1 CYTH domain-containing protein -
  AOT13_RS07460 (AOT13_07450) - 1505404..1505778 (+) 375 WP_013401440.1 hypothetical protein -
  AOT13_RS07465 (AOT13_07455) - 1505795..1506427 (+) 633 WP_013401439.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 70159.31 Da        Isoelectric Point: 5.0109

>NTDB_id=156696 AOT13_RS07430 WP_003252325.1 1500392..1502206(+) (pepF) [Parageobacillus thermoglucosidasius strain DSM 2542]
MDEKKTKKSLPLRSEIPVEETWRLEDIFPTDEAWEQEFQEVKKMIPKLSDYQGRLGESADTLYEALQYQDKISMRLGKLY
TYAHMRYDQDTTNAFYQGLNDRATSLYSEASSAMAFIVPEILAIDEAKLRAFLEEKKELKLYEHALDEINRQRPHVLSAE
EEAILAQAAEVMQASSTTFGMLNNADLTFPTIIDENGEEVEVTHGRFIRFLESTDRRVRRDAFKAVYETYEKYKNTFAST
LAGAVKKDNFFARVRRYKSAREAALSNNNIPESVYDNLIETIHEHLPLLHRYVRLRKKVLGLDELHMYDLYTPLVQDVKM
EVTYEEAKEYMLKGLAPLGDEYIRIVKEGLENRWVDVRENKGKRSGAYSSGAYGTNPYILLNWQDNVNNLFTLVHEFGHS
VHSYYTRKTQPYPYGNYSIFVAEVASTCNEALLNDYLLKTIDDEKKRLYLLNYYLEGFRGTVFRQTMFAEFEHMIHIKAQ
EGEALTADSLTSMYYELNKKYFGDDIVVDKEIGLEWARIPHFYYNYYVYQYATGFSAATALSRQILEEGEPAVKRYIEFL
KAGSSDYPIEVLKKAGVDMTSAEPIRQACQVFAEKLEEMEQLLS

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=156696 AOT13_RS07430 WP_003252325.1 1500392..1502206(+) (pepF) [Parageobacillus thermoglucosidasius strain DSM 2542]
ATGGATGAAAAGAAAACAAAAAAATCGTTACCATTGCGAAGTGAAATTCCTGTTGAAGAAACGTGGCGTTTAGAGGACAT
TTTCCCAACGGATGAAGCATGGGAGCAAGAATTTCAAGAAGTGAAAAAAATGATTCCGAAATTATCGGATTATCAAGGAA
GGCTGGGGGAATCGGCAGATACGTTATACGAAGCGCTGCAATACCAAGATAAGATATCCATGCGTCTTGGCAAGCTGTAT
ACATATGCGCATATGCGCTATGACCAAGATACGACCAACGCTTTTTATCAAGGGCTGAACGATCGAGCGACAAGCCTTTA
CAGCGAAGCGTCAAGCGCGATGGCATTTATCGTGCCGGAAATTTTGGCGATCGATGAGGCGAAATTGCGTGCGTTTTTAG
AAGAGAAAAAAGAATTAAAGCTGTATGAACACGCTTTAGATGAAATTAACCGCCAGCGCCCGCATGTGTTGTCCGCCGAA
GAAGAGGCGATTCTGGCCCAAGCGGCAGAAGTCATGCAAGCATCTTCGACGACATTCGGCATGCTGAATAACGCCGATTT
AACGTTCCCGACGATTATCGATGAAAATGGGGAAGAAGTGGAAGTAACGCATGGCCGTTTTATTCGCTTTTTGGAAAGCA
CGGACCGCCGCGTGCGGCGCGATGCGTTTAAAGCGGTATATGAGACGTACGAAAAGTATAAAAACACATTTGCCAGCACG
CTCGCCGGCGCGGTGAAAAAAGACAACTTTTTCGCGCGCGTCCGCCGCTATAAATCGGCGCGGGAAGCGGCGTTAAGCAA
TAATAACATCCCTGAAAGTGTATACGATAATTTGATTGAAACGATTCATGAACATTTGCCGCTGTTGCACCGCTACGTTC
GTTTGCGCAAAAAAGTGCTTGGGCTTGACGAATTACACATGTATGATTTATACACCCCGCTTGTGCAAGATGTGAAAATG
GAAGTAACGTATGAAGAAGCGAAAGAATACATGTTAAAAGGGCTTGCCCCGCTCGGCGACGAATATATTCGCATCGTCAA
GGAAGGCCTGGAAAACCGCTGGGTTGACGTACGCGAAAACAAGGGAAAACGAAGCGGTGCTTATTCGTCAGGAGCGTACG
GAACAAATCCGTATATTTTGCTTAATTGGCAAGATAACGTCAATAATTTGTTTACACTGGTCCACGAATTCGGCCATTCT
GTGCATAGCTATTACACGCGCAAAACGCAGCCGTATCCGTATGGAAATTATTCGATTTTTGTCGCTGAAGTTGCATCGAC
ATGCAACGAAGCGCTGTTAAATGATTATTTATTAAAAACGATCGATGACGAGAAAAAACGGTTATATTTGCTTAACTATT
ATTTGGAAGGGTTCCGCGGAACGGTCTTCCGCCAAACGATGTTTGCCGAGTTTGAACATATGATTCATATTAAGGCGCAG
GAAGGCGAAGCGCTTACAGCGGATTCATTGACTTCCATGTATTACGAATTAAACAAAAAATATTTTGGCGATGATATTGT
TGTCGATAAGGAAATCGGATTAGAATGGGCGCGTATTCCGCATTTTTACTACAACTATTATGTTTATCAATACGCAACCG
GCTTTAGCGCGGCGACCGCATTAAGCAGACAAATATTAGAAGAAGGGGAGCCGGCCGTGAAGCGCTATATCGAGTTTTTA
AAAGCAGGTAGCTCCGACTATCCGATTGAAGTGTTGAAAAAAGCGGGAGTGGATATGACGAGCGCGGAGCCGATCCGCCA
GGCTTGCCAAGTATTCGCAGAAAAACTGGAAGAAATGGAACAGCTATTGTCGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.931

97.848

0.498

Multiple sequence alignment