Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AOT13_RS00470 Genome accession   NZ_CP012712
Coordinates   84476..85423 (-) Length   315 a.a.
NCBI ID   WP_013876287.1    Uniprot ID   A0AAN1D5D4
Organism   Parageobacillus thermoglucosidasius strain DSM 2542     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 79476..90423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOT13_RS00440 (AOT13_00440) bioD 80178..80897 (-) 720 WP_042385198.1 dethiobiotin synthase -
  AOT13_RS00445 (AOT13_00445) - 80897..81460 (-) 564 WP_042385200.1 biotin transporter BioY -
  AOT13_RS00455 (AOT13_00455) - 81702..82658 (-) 957 WP_013400054.1 siderophore ABC transporter substrate-binding protein -
  AOT13_RS00460 (AOT13_00460) - 82781..83539 (-) 759 WP_013400053.1 ABC transporter ATP-binding protein -
  AOT13_RS00465 (AOT13_00465) - 83533..84483 (-) 951 WP_013876288.1 iron chelate uptake ABC transporter family permease subunit -
  AOT13_RS00470 (AOT13_00470) ceuB 84476..85423 (-) 948 WP_013876287.1 ABC transporter permease Machinery gene
  AOT13_RS00475 (AOT13_00475) - 85878..86444 (+) 567 WP_013400050.1 FAD-dependent oxidoreductase -
  AOT13_RS00480 (AOT13_00480) - 86562..87308 (-) 747 WP_003248205.1 ABC transporter ATP-binding protein -
  AOT13_RS00485 (AOT13_00485) - 87309..88085 (-) 777 WP_013400049.1 ABC transporter ATP-binding protein -
  AOT13_RS00490 (AOT13_00490) - 88082..89146 (-) 1065 WP_013400048.1 branched-chain amino acid ABC transporter permease -
  AOT13_RS00495 (AOT13_00495) - 89159..90040 (-) 882 WP_013400047.1 branched-chain amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34581.87 Da        Isoelectric Point: 9.6176

>NTDB_id=156673 AOT13_RS00470 WP_013876287.1 84476..85423(-) (ceuB) [Parageobacillus thermoglucosidasius strain DSM 2542]
MKKLFILFVILAVASLFIGVQHISLADLLMLKADDVEVLIISRIPRLISIIIAGASMSICGLIMQQLSQNKFVSPTTAGT
MDCARLGILVSLILFASAGPLLKVTIAFLFAFAGTMIFMRILEKVKYKDAIFIPLVGLMFGNIISSMTTFFAYKYNLIQS
ISSWLHGDFSMIIKGRYELLYLSVPLMIVAYMYANRFTIAGMGEEIATNLGLHYRSIVNVGLIIVAATSSVVVLTVGTLP
FLGLIIPNLVTLYYGDHLEKVLPLTALSGAIFVLACDIFGRVVIYPYEIPIGLTVGVIGSGVFLYLLVRRRKQYV

Nucleotide


Download         Length: 948 bp        

>NTDB_id=156673 AOT13_RS00470 WP_013876287.1 84476..85423(-) (ceuB) [Parageobacillus thermoglucosidasius strain DSM 2542]
ATGAAAAAGCTGTTTATATTATTCGTCATATTAGCAGTTGCATCTTTATTTATCGGTGTCCAGCATATTTCGCTTGCCGA
TTTGCTGATGTTGAAAGCGGATGACGTAGAAGTATTAATAATCAGCCGGATTCCGCGGTTGATCAGCATTATTATTGCGG
GTGCCAGCATGAGTATTTGCGGGCTAATTATGCAGCAGTTAAGCCAAAATAAGTTTGTCTCGCCAACGACGGCGGGGACG
ATGGATTGCGCAAGGTTAGGAATTTTAGTGTCATTGATTTTGTTCGCTTCCGCAGGTCCGCTGCTGAAAGTTACGATCGC
ATTTTTATTCGCTTTTGCCGGTACGATGATTTTTATGAGAATACTTGAAAAAGTGAAATATAAAGACGCCATTTTTATTC
CGCTTGTCGGTTTAATGTTTGGCAATATCATCAGTTCCATGACAACATTTTTCGCGTATAAGTACAATTTAATCCAATCC
ATTTCGTCATGGCTGCATGGCGATTTTTCCATGATTATAAAAGGGCGGTATGAACTGCTTTACTTAAGTGTTCCGCTTAT
GATTGTCGCTTATATGTATGCGAACCGTTTTACGATAGCAGGAATGGGAGAAGAAATCGCGACAAATTTAGGCCTTCATT
ATCGGTCCATCGTCAATGTTGGGTTAATCATCGTGGCTGCTACTTCTTCTGTTGTGGTGCTGACGGTCGGGACACTGCCG
TTTTTAGGATTGATTATTCCAAACCTTGTCACATTATATTATGGAGATCATTTAGAGAAAGTCCTGCCTCTGACGGCATT
GTCAGGAGCAATTTTCGTGTTGGCTTGCGATATTTTCGGGCGCGTCGTTATTTATCCGTATGAAATCCCGATCGGTTTGA
CGGTAGGAGTCATTGGCAGCGGCGTATTTTTGTATTTGCTAGTAAGGAGAAGAAAGCAATATGTCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(7-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.305

98.73

0.546

Multiple sequence alignment