Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   CjjRM3196_RS06815 Genome accession   NZ_CP012690
Coordinates   1310649..1311617 (+) Length   322 a.a.
NCBI ID   WP_002853500.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain RM3196     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1305649..1316617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CjjRM3196_RS06790 (CjjRM3196_1347) cdsA 1306558..1307283 (-) 726 WP_002853616.1 phosphatidate cytidylyltransferase -
  CjjRM3196_RS06795 (CjjRM3196_1348) - 1307292..1307630 (-) 339 WP_002852397.1 hypothetical protein -
  CjjRM3196_RS06800 (CjjRM3196_1349) - 1307632..1308939 (-) 1308 WP_002853936.1 NFACT RNA binding domain-containing protein -
  CjjRM3196_RS06805 (CjjRM3196_1350) mobA 1309002..1309577 (+) 576 WP_002853737.1 molybdenum cofactor guanylyltransferase -
  CjjRM3196_RS06810 (CjjRM3196_1351) pldA 1309574..1310563 (+) 990 WP_002853571.1 phospholipase A -
  CjjRM3196_RS06815 (CjjRM3196_1352) ceuB 1310649..1311617 (+) 969 WP_002853500.1 ABC transporter permease Machinery gene
  CjjRM3196_RS06820 (CjjRM3196_1353) ceuC 1311610..1312548 (+) 939 WP_002854141.1 iron chelate uptake ABC transporter family permease subunit -
  CjjRM3196_RS06825 (CjjRM3196_1354) ceuD 1312545..1313300 (+) 756 WP_002853463.1 ABC transporter ATP-binding protein -
  CjjRM3196_RS06830 (CjjRM3196_1355) ceuB 1313313..1314302 (+) 990 WP_002853650.1 enterochelin ABC transporter substrate-binding protein CeuB -
  CjjRM3196_RS06835 (CjjRM3196_1356) - 1314457..1314678 (+) 222 WP_002853781.1 hypothetical protein -
  CjjRM3196_RS06840 (CjjRM3196_1357) - 1314679..1314960 (+) 282 WP_002853938.1 type II toxin-antitoxin system RelE/ParE family toxin -
  CjjRM3196_RS06850 (CjjRM3196_1359) - 1315321..1315875 (-) 555 WP_002854110.1 membrane protein -

Sequence


Protein


Download         Length: 322 a.a.        Molecular weight: 35441.35 Da        Isoelectric Point: 9.6678

>NTDB_id=156452 CjjRM3196_RS06815 WP_002853500.1 1310649..1311617(+) (ceuB) [Campylobacter jejuni subsp. jejuni strain RM3196]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFTQAVIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDITLNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=156452 CjjRM3196_RS06815 WP_002853500.1 1310649..1311617(+) (ceuB) [Campylobacter jejuni subsp. jejuni strain RM3196]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACCCTCACAAGAATTCCTA
GACTTATAGCGATTTTACTTACAGGAATGAGTCTTAGTATATGTGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCTCCAACTACAGCAGGGACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTGCTGGAGCGTC
TTTTTTTACTCAAGCTGTCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGCATTATTAGCGCTATAACCACTTTTTTTGCT
TATGCTTTAAATTATATACAAAATATCCAAGGTTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTCTATATTTCTTTACCACTTTTTATACTTGCTTATTTTTTAGCTCATAAAATTACCATAGTTGGCATGGGCGAAGATA
TAACTTTAAATCTTGGAATTTCTTATAATGGCATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGCTTAGTG
ATTGTAAGCGTTGGGATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTTATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGGTCTTTAATCTTTATCTTTCTTTTACTAAAAAGGAAAGTT
TATGCGTAA

Domains


Predicted by InterproScan.

(15-317)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

99.068

100

0.991


Multiple sequence alignment