Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   CjjRM3196_RS03295 Genome accession   NZ_CP012690
Coordinates   629141..629578 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni subsp. jejuni strain RM3196     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 624141..634578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CjjRM3196_RS08950 - 624631..625776 (+) 1146 WP_002854960.1 histidine kinase -
  CjjRM3196_RS08955 - 625814..626320 (+) 507 WP_236842061.1 DUF4118 domain-containing protein -
  CjjRM3196_RS03280 (CjjRM3196_0649) uvrB 626555..628528 (-) 1974 WP_002855027.1 excinuclease ABC subunit UvrB -
  CjjRM3196_RS03285 (CjjRM3196_0650) - 628682..628912 (+) 231 WP_002852327.1 hypothetical protein -
  CjjRM3196_RS03290 (CjjRM3196_0651) - 628902..629144 (+) 243 WP_002854947.1 hypothetical protein -
  CjjRM3196_RS03295 (CjjRM3196_0652) Cj0683 629141..629578 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  CjjRM3196_RS03300 (CjjRM3196_0653) priA 629560..631413 (+) 1854 WP_002855025.1 primosomal protein N' -
  CjjRM3196_RS03305 (CjjRM3196_0654) cipA 631423..632820 (-) 1398 Protein_635 DUF2972 domain-containing protein -
  CjjRM3196_RS03310 (CjjRM3196_0655) ispG 632966..634039 (+) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=156442 CjjRM3196_RS03295 WP_002852324.1 629141..629578(+) (Cj0683) [Campylobacter jejuni subsp. jejuni strain RM3196]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=156442 CjjRM3196_RS03295 WP_002852324.1 629141..629578(+) (Cj0683) [Campylobacter jejuni subsp. jejuni strain RM3196]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGTTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGCTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment