Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   A9C00_RS24250 Genome accession   NZ_CP015912
Coordinates   4900388..4900864 (+) Length   158 a.a.
NCBI ID   WP_001186747.1    Uniprot ID   -
Organism   Escherichia coli strain 210205630     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4895388..4905864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9C00_RS24220 (A9C00_24220) - 4895544..4896449 (+) 906 WP_048943270.1 diguanylate cyclase regulator RdcB family protein -
  A9C00_RS24225 (A9C00_24225) - 4896446..4897516 (+) 1071 WP_059239982.1 patatin-like phospholipase family protein -
  A9C00_RS24230 (A9C00_24230) - 4897652..4898329 (+) 678 WP_059239983.1 hypothetical protein -
  A9C00_RS24235 (A9C00_24235) - 4898345..4898755 (+) 411 WP_000846713.1 hypothetical protein -
  A9C00_RS24240 (A9C00_24240) - 4898976..4899797 (+) 822 WP_065304414.1 DUF932 domain-containing protein -
  A9C00_RS24245 (A9C00_24245) - 4899888..4900373 (+) 486 WP_000214317.1 antirestriction protein -
  A9C00_RS24250 (A9C00_24250) radC 4900388..4900864 (+) 477 WP_001186747.1 JAB domain-containing protein Machinery gene
  A9C00_RS24255 (A9C00_24255) - 4900933..4901154 (+) 222 WP_000692312.1 DUF987 domain-containing protein -
  A9C00_RS24260 (A9C00_24260) - 4901169..4901813 (+) 645 WP_065304415.1 antitoxin of toxin-antitoxin stability system -
  A9C00_RS24265 (A9C00_24265) - 4901863..4902231 (+) 369 WP_001285390.1 type IV toxin-antitoxin system YeeU family antitoxin -
  A9C00_RS24270 (A9C00_24270) cbtA 4902321..4902698 (+) 378 WP_065304416.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  A9C00_RS30495 - 4902695..4902865 (+) 171 Protein_4649 DUF5983 family protein -
  A9C00_RS30500 (A9C00_24275) - 4902920..4903117 (+) 198 WP_086598277.1 DUF957 domain-containing protein -
  A9C00_RS24280 (A9C00_24280) - 4903214..4904056 (+) 843 WP_065304417.1 DUF4942 domain-containing protein -
  A9C00_RS24290 (A9C00_24290) ghrA 4904527..4905465 (+) 939 WP_000351317.1 glyoxylate/hydroxypyruvate reductase GhrA -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17642.22 Da        Isoelectric Point: 6.9859

>NTDB_id=156367 A9C00_RS24250 WP_001186747.1 4900388..4900864(+) (radC) [Escherichia coli strain 210205630]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=156367 A9C00_RS24250 WP_001186747.1 4900388..4900864(+) (radC) [Escherichia coli strain 210205630]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAGTGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGTGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392