Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   A9C00_RS13770 Genome accession   NZ_CP015912
Coordinates   2758267..2758935 (-) Length   222 a.a.
NCBI ID   WP_001298959.1    Uniprot ID   Q31UY8
Organism   Escherichia coli strain 210205630     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2753267..2763935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9C00_RS13740 (A9C00_13740) rfaQ 2753445..2754503 (-) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -
  A9C00_RS13745 (A9C00_13745) waaA 2754916..2756193 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  A9C00_RS13750 (A9C00_13750) coaD 2756201..2756680 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  A9C00_RS13755 (A9C00_13755) mutM 2756719..2757528 (-) 810 WP_001114546.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  A9C00_RS13760 (A9C00_13760) rpmG 2757626..2757793 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  A9C00_RS13765 (A9C00_13765) rpmB 2757814..2758050 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  A9C00_RS13770 (A9C00_13770) radC 2758267..2758935 (-) 669 WP_001298959.1 RadC family protein Machinery gene
  A9C00_RS13775 (A9C00_13775) coaBC 2759107..2760327 (+) 1221 WP_000050117.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  A9C00_RS13780 (A9C00_13780) dut 2760305..2760763 (+) 459 WP_000976070.1 dUTP diphosphatase -
  A9C00_RS13785 (A9C00_13785) slmA 2760870..2761466 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  A9C00_RS13790 (A9C00_13790) pyrE 2761503..2762144 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  A9C00_RS13795 (A9C00_13795) rph 2762210..2762926 (-) 717 WP_001247089.1 ribonuclease PH -
  A9C00_RS13800 (A9C00_13800) yicC 2763053..2763916 (+) 864 WP_000621336.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25274.35 Da        Isoelectric Point: 7.9748

>NTDB_id=156330 A9C00_RS13770 WP_001298959.1 2758267..2758935(-) (radC) [Escherichia coli strain 210205630]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=156330 A9C00_RS13770 WP_001298959.1 2758267..2758935(-) (radC) [Escherichia coli strain 210205630]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31UY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment