Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   A9C00_RS11980 Genome accession   NZ_CP015912
Coordinates   2376733..2377200 (+) Length   155 a.a.
NCBI ID   WP_000340171.1    Uniprot ID   -
Organism   Escherichia coli strain 210205630     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2371733..2382200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9C00_RS11930 (A9C00_11930) rplP 2371843..2372253 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  A9C00_RS11935 (A9C00_11935) rpsC 2372266..2372967 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  A9C00_RS11940 (A9C00_11940) rplV 2372985..2373317 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  A9C00_RS11945 (A9C00_11945) rpsS 2373332..2373610 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  A9C00_RS11950 (A9C00_11950) rplB 2373627..2374448 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  A9C00_RS11955 (A9C00_11955) rplW 2374466..2374768 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  A9C00_RS11960 (A9C00_11960) rplD 2374765..2375370 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  A9C00_RS11965 (A9C00_11965) rplC 2375381..2376010 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  A9C00_RS11970 (A9C00_11970) rpsJ 2376043..2376354 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  A9C00_RS11980 (A9C00_11980) pilD 2376733..2377200 (+) 468 WP_000340171.1 prepilin peptidase Machinery gene
  A9C00_RS11985 (A9C00_11985) bfr 2377197..2377673 (-) 477 WP_000675515.1 bacterioferritin -
  A9C00_RS11990 (A9C00_11990) bfd 2377746..2377940 (-) 195 WP_065304246.1 bacterioferritin-associated ferredoxin -
  A9C00_RS11995 (A9C00_11995) tuf 2378123..2379307 (-) 1185 WP_000031783.1 elongation factor Tu -
  A9C00_RS12000 (A9C00_12000) fusA 2379378..2381492 (-) 2115 WP_000124700.1 elongation factor G -
  A9C00_RS12005 (A9C00_12005) rpsG 2381589..2382059 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16938.08 Da        Isoelectric Point: 8.1296

>NTDB_id=156322 A9C00_RS11980 WP_000340171.1 2376733..2377200(+) (pilD) [Escherichia coli strain 210205630]
MDATLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=156322 A9C00_RS11980 WP_000340171.1 2376733..2377200(+) (pilD) [Escherichia coli strain 210205630]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361
  pilD Neisseria gonorrhoeae MS11

38.095

94.839

0.361