Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   RN86_RS06150 Genome accession   NZ_CP012648
Coordinates   1258688..1260490 (+) Length   600 a.a.
NCBI ID   WP_053794470.1    Uniprot ID   -
Organism   Streptococcus gordonii strain KCOM 1506 (= ChDC B679)     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1253688..1265490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN86_RS06130 (RN86_06125) - 1255274..1255591 (+) 318 WP_053794466.1 PTS cellobiose transporter subunit IIA -
  RN86_RS06135 (RN86_06130) - 1255622..1256107 (+) 486 WP_053794467.1 hypothetical protein -
  RN86_RS06140 (RN86_06135) celB 1256128..1257483 (+) 1356 WP_053794468.1 PTS cellobiose transporter subunit IIC -
  RN86_RS06145 (RN86_06140) coiA 1257576..1258529 (+) 954 WP_053794469.1 competence protein CoiA family protein Machinery gene
  RN86_RS06150 (RN86_06145) pepF 1258688..1260490 (+) 1803 WP_053794470.1 oligoendopeptidase F Regulator
  RN86_RS06155 (RN86_06150) - 1260492..1261178 (+) 687 WP_053794471.1 O-methyltransferase -
  RN86_RS06160 (RN86_06155) prsA 1261381..1262310 (+) 930 WP_012130637.1 peptidylprolyl isomerase PrsA -
  RN86_RS06165 (RN86_06160) - 1262539..1263024 (+) 486 WP_053794472.1 LURP-one-related family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69385.47 Da        Isoelectric Point: 4.5599

>NTDB_id=156099 RN86_RS06150 WP_053794470.1 1258688..1260490(+) (pepF) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
MAKQRNEIEEKYTWDLSTIFPTDKAFETELAQVSEELKNASNLAGHLLDSAESLLTTTEIQLDLMRRIEKLYSYAHMKND
QDTRVAKYQEHQAKGMTIYSEFGQTFAFYEPEFMEITEDQYQAFLAEKPELQTYQHYFDKLLQKKEHILTQREEELLAGA
GEIFGAASETFAILDNADIVFPVVHNEKGEEVQLTHGNYISLVESKNREVRKEAYEALYSVYEQYQHTYAKTLQTNVKVQ
NYNAKVRKFSSAREAALSANFIPESVYDSLVSAVDKHLPLLQRYIALRAKILGISDLKMYDLYTPLSETDYKFTYEEALA
KSEEVLAILGEDYLSRVKTAFSERWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDATRFAILNHFLDGFRGTVFRQTQFAEFEHAIHKADQEGQVLTSEF
LNELYADLNEKYYGLKKEDNPQIQFEWARIPHFYYNYYVFQYSTGFAAASALAEKIVHGSQEDKDKYLDYLKAGNSDYPL
NVIKKAGVDMEKEDYLNAAFAVFERRLDEFEVLVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=156099 RN86_RS06150 WP_053794470.1 1258688..1260490(+) (pepF) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
ATGGCTAAACAAAGAAATGAAATTGAAGAAAAATATACATGGGATTTAAGTACGATTTTCCCTACAGATAAAGCCTTTGA
GACTGAACTTGCACAGGTTTCTGAAGAATTAAAAAATGCAAGCAATCTAGCAGGACATCTGCTTGATTCGGCAGAAAGTC
TTTTGACAACAACGGAAATTCAATTAGACTTGATGCGCCGTATTGAGAAACTTTATTCTTATGCTCACATGAAGAATGAC
CAGGATACTCGTGTAGCAAAATATCAGGAACACCAAGCTAAAGGAATGACTATTTACAGTGAGTTCGGCCAGACTTTTGC
TTTCTATGAGCCAGAATTCATGGAAATTACAGAAGACCAATACCAAGCTTTTTTGGCTGAAAAACCTGAACTACAAACCT
ATCAACATTATTTTGATAAGCTTTTGCAGAAGAAGGAACACATCCTGACCCAGCGTGAAGAGGAGTTGTTGGCTGGTGCT
GGAGAAATCTTTGGTGCTGCCAGTGAAACCTTTGCTATTTTGGACAATGCGGATATCGTCTTCCCGGTGGTTCACAATGA
AAAGGGCGAAGAAGTCCAGTTGACACATGGGAACTATATTTCTCTAGTAGAGTCTAAAAATCGAGAAGTTCGTAAGGAAG
CTTATGAAGCTCTTTATAGTGTTTATGAGCAGTATCAGCATACTTATGCTAAGACCTTGCAGACAAATGTTAAGGTTCAA
AATTACAACGCTAAAGTCCGCAAGTTCTCATCTGCCCGTGAGGCTGCTTTATCGGCTAACTTTATCCCGGAAAGTGTCTA
TGATAGCTTGGTTTCTGCTGTAGACAAACACCTTCCTCTGTTACAACGTTACATTGCCTTGCGAGCAAAGATTTTGGGTA
TTTCTGATTTGAAGATGTATGATTTGTATACGCCTTTGTCAGAAACAGATTACAAGTTCACTTATGAAGAAGCCTTGGCT
AAGTCTGAGGAAGTCTTGGCTATTCTGGGTGAGGATTATTTGAGCCGAGTGAAGACAGCCTTCTCAGAGCGCTGGATTGA
TGTTTATGAAAATCAAGGCAAGCGTTCAGGAGCATACTCAGGCGGTTCTTACGATACCAATGCCTTTATGTTGCTCAACT
GGCAGGATACACTAGATAATCTCTTTACCTTGGTGCACGAGACAGGTCACAGTATGCACTCCAGCTATACTCGCGAAACC
CAGCCTTATGTCTATGGAGACTACTCTATCTTCCTAGCTGAGATTGCTTCAACGACCAATGAAAATATCCTGACAGAAAA
GCTTTTGGAAGAAGTAGAAGACGACGCAACTCGCTTTGCGATTCTCAATCACTTCTTGGATGGCTTTAGAGGTACAGTCT
TCCGTCAAACTCAGTTTGCGGAGTTTGAGCATGCAATCCACAAGGCTGACCAAGAAGGACAAGTGTTGACCAGCGAGTTT
CTCAATGAGCTATATGCAGACTTAAACGAGAAATACTACGGCTTGAAAAAAGAAGATAATCCGCAGATTCAGTTCGAATG
GGCACGGATTCCTCACTTCTACTATAATTATTATGTTTTCCAATACTCTACAGGATTTGCAGCTGCTTCGGCCTTGGCCG
AAAAGATTGTCCATGGTAGCCAAGAAGACAAGGACAAATATCTGGACTACCTCAAAGCTGGGAACTCTGACTATCCGCTC
AACGTCATCAAAAAAGCAGGTGTGGATATGGAAAAAGAAGACTATTTAAATGCTGCCTTTGCAGTCTTTGAGCGTCGTCT
GGACGAATTTGAAGTCTTGGTAGAAAAGTTGGGACTGGCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

68.289

99.333

0.678

Multiple sequence alignment