Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   RN86_RS05785 Genome accession   NZ_CP012648
Coordinates   1173829..1174539 (-) Length   236 a.a.
NCBI ID   WP_053794449.1    Uniprot ID   -
Organism   Streptococcus gordonii strain KCOM 1506 (= ChDC B679)     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1168829..1179539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN86_RS05760 (RN86_05755) - 1168971..1169243 (+) 273 WP_053794446.1 hypothetical protein -
  RN86_RS05765 (RN86_05760) - 1169256..1169564 (+) 309 WP_053794447.1 hypothetical protein -
  RN86_RS05770 (RN86_05765) - 1169684..1171009 (+) 1326 WP_023916996.1 ISLre2 family transposase -
  RN86_RS05775 (RN86_05770) - 1171433..1172773 (+) 1341 WP_046165237.1 hemolysin family protein -
  RN86_RS05780 (RN86_05775) - 1172930..1173538 (+) 609 WP_053794448.1 hypothetical protein -
  RN86_RS05785 (RN86_05780) treR 1173829..1174539 (-) 711 WP_053794449.1 trehalose operon repressor Regulator
  RN86_RS05790 (RN86_05785) treP 1174719..1176728 (+) 2010 WP_046165240.1 PTS system trehalose-specific EIIBC component -
  RN86_RS05795 (RN86_05790) treC 1176864..1178489 (+) 1626 WP_046165241.1 alpha,alpha-phosphotrehalase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27683.79 Da        Isoelectric Point: 8.9988

>NTDB_id=156094 RN86_RS05785 WP_053794449.1 1173829..1174539(-) (treR) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
MKKYQQLFKLIEQDILSEKYPVGEFLPSENELTQIYKVSRDTVRKALEQLQKEGLIQKFKGQGSKIVKQEHINFPISNLT
SYQELVLQNKLDSKTNVISLEKITVDKKLAKLTGFPEYRLVWRIVQQRVVDQVASVLDIDYLDKELVPTMTREIAEHSIY
HFIENDLGLSIDYAKKEITIDHATSRDKILLDIERENHVISVKSQVYLANGQQFQFTDSRHKLDKFRFVDFAKRHN

Nucleotide


Download         Length: 711 bp        

>NTDB_id=156094 RN86_RS05785 WP_053794449.1 1173829..1174539(-) (treR) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
ATGAAGAAATACCAACAATTATTCAAACTAATCGAGCAAGATATCCTGAGCGAGAAATACCCCGTTGGCGAATTTTTACC
TAGTGAGAATGAATTAACTCAGATTTATAAAGTCAGCCGTGATACTGTCCGAAAGGCTCTAGAGCAACTTCAAAAAGAAG
GATTAATTCAAAAATTTAAGGGACAAGGATCCAAAATCGTCAAACAGGAACACATCAATTTCCCAATCTCCAATCTGACT
AGCTACCAAGAACTCGTCCTACAAAATAAACTAGACTCTAAAACCAATGTCATCAGCCTAGAAAAGATAACCGTAGATAA
AAAACTTGCTAAGCTAACTGGTTTTCCGGAATATCGCTTGGTTTGGCGAATTGTTCAACAAAGAGTTGTTGATCAGGTTG
CTTCTGTCCTTGATATTGATTATTTAGATAAAGAGCTTGTTCCTACGATGACGAGAGAAATTGCAGAGCATTCTATCTAT
CATTTCATTGAAAATGATCTTGGACTTAGCATCGACTATGCTAAAAAGGAAATCACCATTGATCATGCGACCAGTCGAGA
TAAAATTTTGCTCGATATTGAGAGAGAAAACCATGTCATTTCCGTCAAATCTCAGGTTTATTTAGCGAACGGGCAGCAAT
TTCAGTTCACAGACAGCAGACACAAACTCGATAAATTTCGCTTTGTTGATTTTGCCAAAAGGCACAACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-65)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

63.83

99.576

0.636

Multiple sequence alignment