Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | RN86_RS03780 | Genome accession | NZ_CP012648 |
| Coordinates | 783381..785810 (+) | Length | 809 a.a. |
| NCBI ID | WP_053794315.1 | Uniprot ID | - |
| Organism | Streptococcus gordonii strain KCOM 1506 (= ChDC B679) | ||
| Function | degradation of ComW (predicted from homology) Competence regulation |
||
Genomic Context
Location: 778381..790810
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RN86_RS03760 (RN86_03755) | rpsB | 780235..781017 (+) | 783 | WP_008809924.1 | 30S ribosomal protein S2 | - |
| RN86_RS03765 (RN86_03760) | tsf | 781096..782139 (+) | 1044 | WP_012130978.1 | translation elongation factor Ts | - |
| RN86_RS03770 (RN86_03765) | - | 782247..782597 (-) | 351 | WP_008809922.1 | hypothetical protein | - |
| RN86_RS03775 (RN86_03770) | - | 782916..783374 (+) | 459 | WP_008809921.1 | CtsR family transcriptional regulator | - |
| RN86_RS03780 (RN86_03775) | clpC | 783381..785810 (+) | 2430 | WP_053794315.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| RN86_RS03785 (RN86_03780) | - | 786033..787091 (+) | 1059 | WP_046164581.1 | AAA family ATPase | - |
| RN86_RS03790 (RN86_03785) | pnuC | 787113..787928 (+) | 816 | WP_046164580.1 | nicotinamide riboside transporter PnuC | - |
| RN86_RS03795 (RN86_03790) | - | 787972..788760 (+) | 789 | WP_046164579.1 | NUDIX hydrolase | - |
| RN86_RS03800 (RN86_03795) | - | 788996..789679 (+) | 684 | WP_053794316.1 | DUF6287 domain-containing protein | - |
| RN86_RS03805 (RN86_03800) | dusB | 789718..790695 (-) | 978 | WP_008809915.1 | tRNA dihydrouridine synthase DusB | - |
Sequence
Protein
Download Length: 809 a.a. Molecular weight: 90120.84 Da Isoelectric Point: 6.5943
>NTDB_id=156066 RN86_RS03780 WP_053794315.1 783381..785810(+) (clpC) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
MKYSKALIVSIEEAQQLASHFESEYLESWHLLIAFSNYPYSVAGSVLNDYPLEIDHFEDAAYHVVGKSYQKEGQFSILPF
SHRLTTLFKEAKAIAEATHAKEVGTEHILYAIVSDRGTLATRILEFVGFSYEDKEGVLRINDLRRNLEQKSGWTKNDLKA
IRSLHKGFNQAKQNMANMMGMPPTQSGGLEDYTRDLTELARSGQLEPVVGRDQEISRMIQVLSRKTKNNPVLVGDAGVGK
TALAFGLAQRVASGQVPHELAKMRVLELDLMNVVAGTRFRGDFEERMNNIIDDIEKDGKVILFIDELHTIMGSGSGIDST
MDAANILKPALARGTLRTIGATTQEEYQKHIEKDAALSRRFAKISIEEPSVADSIAILKGLKENYEAHHKVTITDQAIET
AVKYAHRYLTSKHLPDSAIDLLDEASATVRNNGPQSHAQEDLSPADRAIIAGQFNKLGRLIKEENQPLSSNLKVEETDIL
TTLSRLSGIPVQKLTQTDAKKYFHLEEELHKRVIGQDEAISAISRAIRRNQSGIRANKRPIGSFMFLGPTGVGKTELAKA
LAETLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNRPYSVLLFDEVEKAHPDIFNVLLQVLDDG
VLTDSKGRKIDFSNTIIIMTSNLGATSLRDDKTVGFGARDIRLDHANMEKRMLEELKKTYRPEFINRIDEKVVFHSLSAD
HMQEVVKVMVKPLVASLAEKNIQLKFQASALKLLAKEGYDVEMGARPLRRTLQTKVEDKLAELLLTGDLQAGQTLKVGVK
AGQLKFDIA
MKYSKALIVSIEEAQQLASHFESEYLESWHLLIAFSNYPYSVAGSVLNDYPLEIDHFEDAAYHVVGKSYQKEGQFSILPF
SHRLTTLFKEAKAIAEATHAKEVGTEHILYAIVSDRGTLATRILEFVGFSYEDKEGVLRINDLRRNLEQKSGWTKNDLKA
IRSLHKGFNQAKQNMANMMGMPPTQSGGLEDYTRDLTELARSGQLEPVVGRDQEISRMIQVLSRKTKNNPVLVGDAGVGK
TALAFGLAQRVASGQVPHELAKMRVLELDLMNVVAGTRFRGDFEERMNNIIDDIEKDGKVILFIDELHTIMGSGSGIDST
MDAANILKPALARGTLRTIGATTQEEYQKHIEKDAALSRRFAKISIEEPSVADSIAILKGLKENYEAHHKVTITDQAIET
AVKYAHRYLTSKHLPDSAIDLLDEASATVRNNGPQSHAQEDLSPADRAIIAGQFNKLGRLIKEENQPLSSNLKVEETDIL
TTLSRLSGIPVQKLTQTDAKKYFHLEEELHKRVIGQDEAISAISRAIRRNQSGIRANKRPIGSFMFLGPTGVGKTELAKA
LAETLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNRPYSVLLFDEVEKAHPDIFNVLLQVLDDG
VLTDSKGRKIDFSNTIIIMTSNLGATSLRDDKTVGFGARDIRLDHANMEKRMLEELKKTYRPEFINRIDEKVVFHSLSAD
HMQEVVKVMVKPLVASLAEKNIQLKFQASALKLLAKEGYDVEMGARPLRRTLQTKVEDKLAELLLTGDLQAGQTLKVGVK
AGQLKFDIA
Nucleotide
Download Length: 2430 bp
>NTDB_id=156066 RN86_RS03780 WP_053794315.1 783381..785810(+) (clpC) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
ATGAAATATTCAAAAGCCTTGATTGTTAGTATAGAAGAAGCCCAGCAACTGGCTAGCCATTTTGAATCTGAGTATTTAGA
GTCATGGCATCTCTTGATTGCTTTTTCTAATTATCCGTACAGCGTAGCAGGCTCAGTTTTAAATGATTATCCACTGGAAA
TCGATCATTTTGAGGATGCTGCTTACCATGTAGTAGGAAAGTCTTATCAGAAGGAAGGGCAATTTAGTATCCTGCCTTTT
TCTCATCGCTTGACGACTCTTTTTAAGGAGGCAAAAGCTATAGCCGAAGCTACTCACGCAAAGGAAGTCGGAACTGAACA
TATCCTATACGCTATTGTTAGCGATAGAGGTACCCTAGCAACTCGTATTTTGGAATTTGTCGGCTTTAGTTATGAAGACA
AAGAAGGAGTCTTGCGTATTAATGATTTGCGGAGAAATCTGGAACAAAAGTCTGGCTGGACTAAGAATGATTTAAAAGCA
ATCCGCAGTCTTCATAAAGGTTTTAATCAAGCCAAGCAAAACATGGCAAACATGATGGGGATGCCACCTACTCAGAGTGG
TGGTCTAGAAGATTACACACGAGACTTGACGGAATTAGCTCGTTCAGGTCAGCTCGAGCCTGTTGTTGGTCGAGATCAGG
AAATCTCTCGGATGATTCAGGTTCTCAGTCGCAAGACGAAGAATAACCCTGTCTTGGTTGGGGATGCTGGAGTTGGTAAA
ACTGCTCTAGCTTTCGGTTTGGCCCAGCGTGTAGCTTCTGGTCAAGTTCCGCACGAACTAGCCAAAATGCGGGTTTTAGA
GCTTGATTTAATGAATGTAGTGGCAGGGACTCGTTTCCGTGGGGATTTTGAAGAACGTATGAACAATATCATTGACGATA
TTGAGAAAGATGGTAAGGTCATTCTCTTTATCGATGAGCTTCATACGATTATGGGATCTGGTAGCGGTATTGACTCTACG
ATGGATGCTGCGAATATCCTTAAACCTGCTCTGGCTCGCGGAACACTGCGTACGATAGGAGCTACAACTCAAGAAGAATA
CCAAAAGCATATTGAAAAAGACGCTGCTCTATCTCGGCGCTTTGCTAAGATCAGTATTGAAGAGCCAAGTGTAGCTGACA
GCATTGCTATCCTGAAGGGGCTAAAAGAAAACTATGAAGCCCATCATAAGGTAACGATTACAGATCAAGCCATTGAAACA
GCTGTAAAATATGCCCACCGTTATTTGACAAGTAAGCATCTGCCAGATTCAGCAATTGATCTGTTAGATGAAGCGAGTGC
CACAGTACGTAACAATGGTCCTCAGAGTCATGCACAAGAGGATTTGAGTCCAGCAGATCGAGCAATTATAGCTGGTCAGT
TCAATAAGCTTGGCCGCTTGATCAAGGAAGAAAATCAACCTCTATCAAGTAATTTGAAGGTAGAGGAAACAGACATTTTG
ACAACTCTCAGTCGCCTGTCTGGTATTCCAGTCCAAAAATTGACTCAGACAGATGCTAAAAAATATTTTCACTTAGAAGA
AGAATTGCATAAGCGGGTGATTGGGCAAGATGAAGCTATATCAGCTATTAGTCGCGCAATTCGTCGTAATCAGTCAGGTA
TTCGAGCGAATAAGCGACCGATTGGTTCCTTTATGTTCTTGGGACCAACTGGGGTTGGTAAGACCGAGTTAGCTAAGGCT
CTGGCAGAAACCCTCTTTGACGACGAATCAGCTCTCATTCGTTTTGATATGAGTGAATACATGGAGAAATTTGCAGCCAG
TCGTCTCAACGGAGCGCCTCCAGGTTATGTCGGCTATGAAGAAGGGGGCGAATTGACAGAGAAAGTTCGCAACAGGCCTT
ATTCTGTTCTCTTATTTGACGAAGTTGAAAAAGCCCATCCGGATATTTTCAATGTCCTTCTGCAGGTTTTAGATGATGGT
GTATTGACTGATAGTAAGGGACGAAAGATTGATTTTTCAAATACGATTATTATCATGACCAGCAATCTAGGAGCAACCAG
TTTGCGTGATGATAAGACGGTCGGCTTTGGAGCGCGCGACATTCGCTTGGATCATGCAAATATGGAAAAACGAATGTTAG
AAGAGCTCAAAAAGACATACCGTCCAGAATTTATTAACCGGATTGATGAAAAAGTCGTCTTCCATAGCTTGTCAGCAGAC
CATATGCAGGAGGTTGTCAAAGTGATGGTTAAACCTCTGGTTGCCAGTCTAGCTGAAAAGAATATCCAACTAAAATTCCA
AGCTAGTGCCTTGAAACTACTAGCTAAAGAAGGATATGATGTAGAAATGGGGGCTAGACCTCTTCGTAGGACTCTGCAAA
CCAAAGTTGAAGACAAACTAGCAGAACTGCTATTAACTGGTGATTTACAAGCTGGTCAGACCTTGAAAGTGGGGGTTAAG
GCAGGTCAGTTGAAGTTTGATATAGCCTAA
ATGAAATATTCAAAAGCCTTGATTGTTAGTATAGAAGAAGCCCAGCAACTGGCTAGCCATTTTGAATCTGAGTATTTAGA
GTCATGGCATCTCTTGATTGCTTTTTCTAATTATCCGTACAGCGTAGCAGGCTCAGTTTTAAATGATTATCCACTGGAAA
TCGATCATTTTGAGGATGCTGCTTACCATGTAGTAGGAAAGTCTTATCAGAAGGAAGGGCAATTTAGTATCCTGCCTTTT
TCTCATCGCTTGACGACTCTTTTTAAGGAGGCAAAAGCTATAGCCGAAGCTACTCACGCAAAGGAAGTCGGAACTGAACA
TATCCTATACGCTATTGTTAGCGATAGAGGTACCCTAGCAACTCGTATTTTGGAATTTGTCGGCTTTAGTTATGAAGACA
AAGAAGGAGTCTTGCGTATTAATGATTTGCGGAGAAATCTGGAACAAAAGTCTGGCTGGACTAAGAATGATTTAAAAGCA
ATCCGCAGTCTTCATAAAGGTTTTAATCAAGCCAAGCAAAACATGGCAAACATGATGGGGATGCCACCTACTCAGAGTGG
TGGTCTAGAAGATTACACACGAGACTTGACGGAATTAGCTCGTTCAGGTCAGCTCGAGCCTGTTGTTGGTCGAGATCAGG
AAATCTCTCGGATGATTCAGGTTCTCAGTCGCAAGACGAAGAATAACCCTGTCTTGGTTGGGGATGCTGGAGTTGGTAAA
ACTGCTCTAGCTTTCGGTTTGGCCCAGCGTGTAGCTTCTGGTCAAGTTCCGCACGAACTAGCCAAAATGCGGGTTTTAGA
GCTTGATTTAATGAATGTAGTGGCAGGGACTCGTTTCCGTGGGGATTTTGAAGAACGTATGAACAATATCATTGACGATA
TTGAGAAAGATGGTAAGGTCATTCTCTTTATCGATGAGCTTCATACGATTATGGGATCTGGTAGCGGTATTGACTCTACG
ATGGATGCTGCGAATATCCTTAAACCTGCTCTGGCTCGCGGAACACTGCGTACGATAGGAGCTACAACTCAAGAAGAATA
CCAAAAGCATATTGAAAAAGACGCTGCTCTATCTCGGCGCTTTGCTAAGATCAGTATTGAAGAGCCAAGTGTAGCTGACA
GCATTGCTATCCTGAAGGGGCTAAAAGAAAACTATGAAGCCCATCATAAGGTAACGATTACAGATCAAGCCATTGAAACA
GCTGTAAAATATGCCCACCGTTATTTGACAAGTAAGCATCTGCCAGATTCAGCAATTGATCTGTTAGATGAAGCGAGTGC
CACAGTACGTAACAATGGTCCTCAGAGTCATGCACAAGAGGATTTGAGTCCAGCAGATCGAGCAATTATAGCTGGTCAGT
TCAATAAGCTTGGCCGCTTGATCAAGGAAGAAAATCAACCTCTATCAAGTAATTTGAAGGTAGAGGAAACAGACATTTTG
ACAACTCTCAGTCGCCTGTCTGGTATTCCAGTCCAAAAATTGACTCAGACAGATGCTAAAAAATATTTTCACTTAGAAGA
AGAATTGCATAAGCGGGTGATTGGGCAAGATGAAGCTATATCAGCTATTAGTCGCGCAATTCGTCGTAATCAGTCAGGTA
TTCGAGCGAATAAGCGACCGATTGGTTCCTTTATGTTCTTGGGACCAACTGGGGTTGGTAAGACCGAGTTAGCTAAGGCT
CTGGCAGAAACCCTCTTTGACGACGAATCAGCTCTCATTCGTTTTGATATGAGTGAATACATGGAGAAATTTGCAGCCAG
TCGTCTCAACGGAGCGCCTCCAGGTTATGTCGGCTATGAAGAAGGGGGCGAATTGACAGAGAAAGTTCGCAACAGGCCTT
ATTCTGTTCTCTTATTTGACGAAGTTGAAAAAGCCCATCCGGATATTTTCAATGTCCTTCTGCAGGTTTTAGATGATGGT
GTATTGACTGATAGTAAGGGACGAAAGATTGATTTTTCAAATACGATTATTATCATGACCAGCAATCTAGGAGCAACCAG
TTTGCGTGATGATAAGACGGTCGGCTTTGGAGCGCGCGACATTCGCTTGGATCATGCAAATATGGAAAAACGAATGTTAG
AAGAGCTCAAAAAGACATACCGTCCAGAATTTATTAACCGGATTGATGAAAAAGTCGTCTTCCATAGCTTGTCAGCAGAC
CATATGCAGGAGGTTGTCAAAGTGATGGTTAAACCTCTGGTTGCCAGTCTAGCTGAAAAGAATATCCAACTAAAATTCCA
AGCTAGTGCCTTGAAACTACTAGCTAAAGAAGGATATGATGTAGAAATGGGGGCTAGACCTCTTCGTAGGACTCTGCAAA
CCAAAGTTGAAGACAAACTAGCAGAACTGCTATTAACTGGTGATTTACAAGCTGGTCAGACCTTGAAAGTGGGGGTTAAG
GCAGGTCAGTTGAAGTTTGATATAGCCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Streptococcus pneumoniae Rx1 |
78.175 |
100 |
0.784 |
| clpC | Streptococcus pneumoniae D39 |
78.175 |
100 |
0.784 |
| clpC | Streptococcus pneumoniae TIGR4 |
78.175 |
100 |
0.784 |
| clpC | Streptococcus mutans UA159 |
67.625 |
98.888 |
0.669 |
| clpC | Streptococcus thermophilus LMG 18311 |
66.054 |
100 |
0.666 |
| clpC | Streptococcus thermophilus LMD-9 |
65.931 |
100 |
0.665 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
48.626 |
100 |
0.503 |
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
44.819 |
100 |
0.46 |
| clpE | Streptococcus pneumoniae Rx1 |
46.13 |
79.852 |
0.368 |
| clpE | Streptococcus pneumoniae D39 |
46.13 |
79.852 |
0.368 |
| clpE | Streptococcus pneumoniae R6 |
46.13 |
79.852 |
0.368 |
| clpE | Streptococcus pneumoniae TIGR4 |
46.13 |
79.852 |
0.368 |
| clpE | Streptococcus mutans UA159 |
47.436 |
77.132 |
0.366 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
44.613 |
81.459 |
0.363 |