Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   RN86_RS00410 Genome accession   NZ_CP012648
Coordinates   79233..79964 (-) Length   243 a.a.
NCBI ID   WP_046165133.1    Uniprot ID   -
Organism   Streptococcus gordonii strain KCOM 1506 (= ChDC B679)     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 74233..84964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN86_RS00380 (RN86_00375) - 74521..74817 (-) 297 WP_008808548.1 YlxR family protein -
  RN86_RS00385 (RN86_00380) nusA 74828..76069 (-) 1242 WP_046165135.1 transcription termination factor NusA -
  RN86_RS00390 (RN86_00385) rimP 76114..76602 (-) 489 WP_012000044.1 ribosome maturation factor RimP -
  RN86_RS00395 (RN86_00390) trmB 76714..77349 (-) 636 WP_045772936.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  RN86_RS00400 (RN86_00395) ccrZ 77346..78140 (-) 795 WP_008808544.1 cell cycle regulator CcrZ -
  RN86_RS00405 (RN86_00400) pptB 78181..79236 (-) 1056 WP_046165134.1 ABC transporter permease Regulator
  RN86_RS00410 (RN86_00405) pptA 79233..79964 (-) 732 WP_046165133.1 ABC transporter ATP-binding protein Regulator
  RN86_RS00415 (RN86_00410) - 80103..80519 (+) 417 WP_045772933.1 HIT family protein -
  RN86_RS00420 (RN86_00415) - 80530..80832 (+) 303 WP_045772932.1 hypothetical protein -
  RN86_RS00425 (RN86_00420) - 80880..82091 (-) 1212 WP_046165131.1 LCP family protein -
  RN86_RS00430 (RN86_00425) - 82098..82622 (-) 525 WP_053794094.1 GNAT family N-acetyltransferase -
  RN86_RS00435 (RN86_00430) tsaE 82622..83068 (-) 447 WP_053794095.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  RN86_RS00440 (RN86_00435) - 83151..84575 (-) 1425 WP_045634230.1 NCS2 family permease -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26863.31 Da        Isoelectric Point: 4.5658

>NTDB_id=156051 RN86_RS00410 WP_046165133.1 79233..79964(-) (pptA) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
MLEIKGLTGGYVNIPVLKDVSFEVGDGQLVGLIGLNGAGKSTTINEIIGLLTPYQGEILIDGLSLKSDRTAYRKKIGFIP
ETPSLYEELTLKEHIETVAMAYDIDSQTAMDRVDKLLQIFRLKDKLDWFPVNFSKGMKQKVMIICAFVIDPSLFIVDEPF
LGLDPLAISDLIELLAEEKAKGKSILMSTHVLDSAEKMCDSFVILHKGQVRAKGNLAQLREEFSLPEASLNEIYLALTEE
AAL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=156051 RN86_RS00410 WP_046165133.1 79233..79964(-) (pptA) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
ATGTTAGAAATAAAAGGGCTTACAGGTGGCTATGTCAATATTCCTGTTTTGAAAGATGTCAGTTTTGAAGTTGGAGACGG
TCAGCTTGTTGGACTGATTGGTCTAAACGGGGCTGGAAAGTCAACAACCATCAATGAAATAATCGGTCTCTTGACGCCTT
ATCAAGGAGAAATTTTGATAGATGGTTTGAGCCTGAAGTCAGACAGGACAGCCTATCGCAAAAAGATTGGTTTTATACCT
GAAACACCGAGTCTCTATGAAGAATTAACCTTGAAGGAACATATTGAGACGGTTGCTATGGCTTATGATATTGACTCGCA
AACAGCTATGGATCGAGTGGATAAATTGCTTCAGATCTTCCGTCTTAAAGACAAGTTAGATTGGTTTCCGGTTAATTTCT
CAAAGGGAATGAAGCAGAAGGTTATGATCATCTGTGCCTTTGTGATTGACCCTAGTTTGTTTATTGTGGATGAACCCTTT
TTAGGATTGGATCCTCTGGCCATCTCTGATTTGATTGAGCTCTTGGCAGAAGAAAAGGCTAAAGGGAAGTCTATCCTGAT
GAGTACCCATGTGCTTGATTCGGCAGAGAAAATGTGTGATTCTTTTGTTATCTTGCACAAGGGTCAGGTACGGGCTAAAG
GAAATTTGGCTCAGTTGCGAGAAGAATTTTCATTGCCAGAAGCAAGTCTCAATGAAATCTACCTAGCTTTGACAGAAGAG
GCTGCCCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

74.895

98.354

0.737
  pptA Streptococcus thermophilus LMD-9

74.059

98.354

0.728

Multiple sequence alignment