Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   RN80_RS07020 Genome accession   NZ_CP012646
Coordinates   1443432..1445234 (-) Length   600 a.a.
NCBI ID   WP_060628447.1    Uniprot ID   -
Organism   Streptococcus mitis strain KCOM 1350 (= ChDC B183)     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1438432..1450234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN80_RS07005 (RN80_07020) ftsW 1440328..1441551 (-) 1224 WP_024057920.1 cell division peptidoglycan polymerase FtsW -
  RN80_RS07010 (RN80_07025) prsA 1441712..1442650 (-) 939 WP_000727943.1 peptidylprolyl isomerase PrsA -
  RN80_RS07015 (RN80_07030) - 1442717..1443430 (-) 714 WP_004241675.1 O-methyltransferase -
  RN80_RS07020 (RN80_07035) pepF 1443432..1445234 (-) 1803 WP_060628447.1 oligoendopeptidase F Regulator
  RN80_RS07025 (RN80_07040) coiA 1445253..1446206 (-) 954 WP_060628449.1 competence protein CoiA Machinery gene
  RN80_RS07030 (RN80_07045) tehB 1446279..1447139 (-) 861 WP_000413779.1 SAM-dependent methyltransferase TehB -
  RN80_RS07035 (RN80_07050) smpB 1447155..1447622 (-) 468 WP_001051750.1 SsrA-binding protein SmpB -
  RN80_RS07040 (RN80_07055) rnr 1447585..1449939 (-) 2355 WP_060628451.1 ribonuclease R -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69893.83 Da        Isoelectric Point: 4.5884

>NTDB_id=156027 RN80_RS07020 WP_060628447.1 1443432..1445234(-) (pepF) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
MVLQRHEINEKDTWDLSTIYPTDQAWEEALKDLTEQLETVAQYEGHLLDSADSLLEITEFSLEMERQMEKLYVYAHMKND
QDTREAKYQEYYAKAMTLYSQLDQAFSFYEPEFMEISEKQYADFLEAQPKLQVYQHYFDKLLQGKDHVLSQREEELLAGA
GEIFGSASETFAILDNADIVFPYVLDDDGKEVQLSHGTYTRLMESKNREVRRGAYQALYATYQQFQHTYAKTLQTNVKVQ
NYRAKVRNYKSARHAALAANFVPESVYDNLVAAVRKHLPLLHRYLELRSKILGISDLKMYDVYTPLSSVEYSFTYKEALK
KAEDALAVLGEDYLSRVKRAFSDRWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDNLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDATRFAILNNFLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSDF
LNKLYADLNQEYYGLSKEDNPEIQYEWARIPHFYYNYYVYQYSTGFAAASALAEKIVHGNQEDRDRYIDYLKAGKSDYPL
NVMRKAGVDMEKEDYLNDAFAVFERRLNEFEALVEKLGMA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=156027 RN80_RS07020 WP_060628447.1 1443432..1445234(-) (pepF) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
ATGGTATTACAAAGACATGAAATAAATGAAAAAGATACATGGGATCTATCAACGATCTACCCAACTGACCAGGCTTGGGA
AGAAGCCTTAAAAGATTTAACAGAACAATTGGAGACAGTAGCCCAGTATGAAGGCCATCTCCTGGATAGTGCGGATAGCC
TACTCGAAATTACTGAATTTTCTCTTGAAATGGAACGCCAAATGGAAAAGCTTTACGTTTATGCTCATATGAAGAATGAC
CAAGACACACGTGAAGCCAAGTACCAAGAGTACTATGCCAAGGCCATGACTCTCTATAGCCAGCTAGACCAAGCCTTTTC
ATTCTATGAACCTGAATTTATGGAAATCAGTGAAAAGCAGTATGCTGACTTTTTAGAAGCTCAGCCAAAATTGCAGGTTT
ATCAACACTATTTTGACAAGTTATTGCAAGGCAAGGACCACGTTCTTTCACAACGCGAAGAAGAGCTATTGGCTGGAGCT
GGAGAAATCTTTGGTTCGGCAAGTGAAACCTTCGCTATCTTGGACAATGCGGATATTGTTTTCCCTTATGTTCTTGACGA
TGATGGTAAGGAAGTTCAGCTATCTCATGGAACTTACACACGTTTGATGGAGTCTAAAAATCGTGAGGTGCGTCGTGGTG
CTTATCAAGCTCTTTATGCGACTTATCAACAATTCCAACATACCTATGCCAAAACCTTGCAAACCAATGTTAAGGTTCAA
AACTACCGTGCCAAAGTTCGCAACTACAAGAGTGCTCGTCATGCAGCCCTAGCGGCTAATTTTGTTCCAGAAAGTGTTTA
TGACAATTTGGTAGCAGCAGTTCGCAAGCATTTGCCACTCTTGCATCGTTACCTTGAACTTCGTTCAAAAATCTTGGGGA
TTTCAGACCTTAAGATGTACGATGTCTACACACCGCTTTCATCTGTTGAATATAGTTTTACCTACAAAGAAGCCTTGAAA
AAGGCAGAAGATGCCTTGGCAGTCTTGGGTGAGGATTACTTGAGCCGTGTTAAACGTGCCTTCAGTGATCGTTGGATTGA
TGTTTACGAAAATCAAGGCAAGCGTTCAGGGGCTTACTCTGGTGGTTCTTACGATACAAATGCCTTTATGCTTCTTAACT
GGCAGGACAATCTAGACAATCTCTTTACCCTTGTTCATGAAACAGGTCACAGTATGCATTCAAGCTATACTCGTGAAACG
CAGCCTTATGTTTACGGAGATTATTCTATCTTCTTGGCTGAGATTGCATCAACTACCAATGAAAATATCTTGACGGAGAA
ATTATTGGAAGAAGTGGAAGATGATGCAACGCGCTTTGCTATTCTCAATAACTTCCTAGATGGTTTCCGTGGGACAGTTT
TCCGTCAAACTCAATTTGCTGAGTTTGAACACGCTATCCACCAAGCGGACCAAAATGGAGAAGTCTTGACAAGTGATTTC
CTAAATAAACTCTACGCAGACTTGAACCAAGAGTATTATGGTTTGAGTAAGGAAGACAATCCTGAAATCCAATACGAGTG
GGCTCGCATTCCACACTTCTACTATAACTACTATGTATACCAATATTCAACTGGCTTTGCAGCAGCCTCAGCCTTGGCTG
AAAAGATTGTCCATGGTAATCAAGAAGACCGTGACCGCTATATCGACTATCTCAAGGCAGGTAAGTCTGACTATCCACTT
AATGTCATGAGAAAAGCTGGAGTTGATATGGAGAAGGAAGACTACCTCAACGATGCCTTTGCAGTCTTTGAACGTCGTTT
AAATGAGTTTGAAGCACTTGTTGAAAAATTGGGAATGGCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

66.946

99.333

0.665

Multiple sequence alignment