Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   RN80_RS04135 Genome accession   NZ_CP012646
Coordinates   813556..813849 (+) Length   97 a.a.
NCBI ID   WP_033686503.1    Uniprot ID   -
Organism   Streptococcus mitis strain KCOM 1350 (= ChDC B183)     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 808556..818849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN80_RS04110 (RN80_04120) - 809727..810080 (+) 354 WP_253275441.1 hypothetical protein -
  RN80_RS04115 (RN80_04125) - 810082..810903 (+) 822 WP_060627698.1 hypothetical protein -
  RN80_RS04120 (RN80_04130) - 810933..812534 (+) 1602 WP_060627700.1 type I restriction-modification system subunit M -
  RN80_RS04125 (RN80_04135) - 812616..813020 (+) 405 WP_060627702.1 YbgA family protein -
  RN80_RS04130 (RN80_04140) - 813004..813369 (+) 366 WP_060627704.1 TIGR02328 family protein -
  RN80_RS04135 (RN80_04145) HI0659 813556..813849 (+) 294 WP_033686503.1 helix-turn-helix domain-containing protein Machinery gene
  RN80_RS04140 (RN80_04150) metE 814374..816623 (+) 2250 WP_060627706.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  RN80_RS04145 (RN80_04155) metF 816725..817591 (+) 867 WP_060627708.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10666.32 Da        Isoelectric Point: 5.8787

>NTDB_id=156014 RN80_RS04135 WP_033686503.1 813556..813849(+) (HI0659) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
MKNSAIGSNWKDVRSELFTKEEILESDMRVAIMSELIEARHEQGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAVVPLEQGKS

Nucleotide


Download         Length: 294 bp        

>NTDB_id=156014 RN80_RS04135 WP_033686503.1 813556..813849(+) (HI0659) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
ATGAAGAATAGTGCTATTGGGAGTAACTGGAAGGATGTCCGGTCAGAACTCTTTACCAAGGAGGAAATACTTGAAAGTGA
TATGCGAGTAGCTATCATGAGTGAGTTGATTGAGGCTAGACATGAGCAAGGAATCAGTCAGAAAAAGCTAGAAGAACTCA
GTGGAGTAAGCCAGCCGGTTATAGCTAGGATGGAAACAGGTAAGACTAGCCCTCAGTTGGACACAGTCTTAAAAGTCCTA
GCCAGTTTAGGAAAGACACTAGCAGTCGTCCCACTTGAACAGGGGAAAAGTTGA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(37-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

59.341

93.814

0.557

Multiple sequence alignment