Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   LLUC08_RS06110 Genome accession   NZ_CP015903
Coordinates   1250236..1251291 (-) Length   351 a.a.
NCBI ID   WP_081199701.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain UC08     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1245236..1256291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC08_RS06075 (LLUC08_02635) - 1245415..1245594 (-) 180 WP_081199691.1 hypothetical protein -
  LLUC08_RS06080 (LLUC08_1172) - 1245609..1245971 (-) 363 WP_081199693.1 hypothetical protein -
  LLUC08_RS06085 (LLUC08_1173) - 1246002..1246196 (-) 195 WP_081199695.1 hypothetical protein -
  LLUC08_RS06090 (LLUC08_1174) - 1246508..1247377 (-) 870 WP_081199697.1 ParA family protein -
  LLUC08_RS06095 (LLUC08_1175) - 1247370..1247825 (-) 456 WP_081199699.1 hypothetical protein -
  LLUC08_RS06100 (LLUC08_1176) - 1248083..1249018 (-) 936 WP_081199700.1 hypothetical protein -
  LLUC08_RS06105 (LLUC08_1177) - 1249865..1250152 (-) 288 WP_015426413.1 hypothetical protein -
  LLUC08_RS06110 (LLUC08_1178) xerS 1250236..1251291 (-) 1056 WP_081199701.1 tyrosine recombinase XerS Machinery gene
  LLUC08_RS06115 (LLUC08_1179) - 1252181..1253110 (-) 930 WP_081199702.1 N(5)-(carboxyethyl)ornithine synthase -
  LLUC08_RS06120 (LLUC08_1180) - 1253149..1254099 (-) 951 WP_148669248.1 CorA family divalent cation transporter -
  LLUC08_RS06125 (LLUC08_1181) - 1254224..1254775 (-) 552 WP_081199703.1 Asp23/Gls24 family envelope stress response protein -
  LLUC08_RS06130 (LLUC08_1182) - 1254796..1254984 (-) 189 WP_015425997.1 DUF2273 domain-containing protein -
  LLUC08_RS06135 (LLUC08_1183) amaP 1254994..1255554 (-) 561 WP_011835141.1 alkaline shock response membrane anchor protein AmaP -
  LLUC08_RS06140 (LLUC08_1184) - 1255584..1255823 (-) 240 WP_015426469.1 GlsB/YeaQ/YmgE family stress response membrane protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 40587.41 Da        Isoelectric Point: 9.8335

>NTDB_id=155874 LLUC08_RS06110 WP_081199701.1 1250236..1251291(-) (xerS) [Lactococcus lactis subsp. lactis strain UC08]
MSENHGYRYNVNKLMLELPYYVNEFIQSKDTVPLSIASIYSYCLEFRKYLKWMNENNITNHASIKEITLKEMENVTKREL
EAFVLHERLRLESKCGSNTHTSALNRTIAAIKSLYNYLCEQTQDDNGNTYMTRNVSRLIHIRKKSETLHYRAAQLEGKLF
LGDETKAFLEFVEQDYEKSVSNRAKTSFKKNKKRDLAILSLFLSSGLRCAELVGINLNDLNLETGKVSVMRKEGKKDVVP
IAHFSHKYITDYYNTRSSITTEIQALFITDYNQKIRKISNASINKLVAKYSEAYKIRVTPHTLRHTFATRLYNVSHSQVL
VSNQLGHSSTKPTELYTHIVSAEAKDALRKL

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=155874 LLUC08_RS06110 WP_081199701.1 1250236..1251291(-) (xerS) [Lactococcus lactis subsp. lactis strain UC08]
ATGTCAGAAAATCATGGTTATCGTTATAATGTAAATAAACTCATGCTTGAGTTACCCTACTACGTCAATGAGTTTATCCA
GTCTAAGGACACTGTACCGCTGAGTATTGCCTCTATTTACTCTTACTGCTTGGAGTTTAGGAAATACTTGAAATGGATGA
ATGAAAATAACATAACGAACCATGCTAGCATCAAAGAAATCACTTTGAAAGAAATGGAAAACGTAACGAAACGTGAGCTA
GAAGCTTTTGTACTTCACGAACGACTCCGTTTAGAATCAAAATGTGGTTCTAATACACATACATCAGCATTAAACCGCAC
CATTGCAGCGATTAAAAGCCTATATAACTATTTGTGTGAACAAACCCAAGATGATAATGGCAATACATACATGACTAGAA
ATGTCAGTCGCTTAATTCATATCCGAAAAAAGAGTGAAACCTTGCATTACCGTGCGGCTCAACTGGAAGGTAAACTATTC
CTAGGAGATGAAACCAAAGCCTTTTTAGAATTTGTTGAGCAAGACTATGAAAAGTCTGTCAGTAATCGTGCGAAAACAAG
TTTCAAAAAAAATAAAAAAAGAGATTTAGCCATACTAAGCCTCTTTTTATCTTCTGGATTACGCTGTGCGGAACTTGTAG
GGATCAATCTCAATGATTTAAACCTTGAAACTGGAAAAGTAAGTGTTATGCGAAAAGAAGGAAAGAAAGATGTTGTTCCA
ATTGCCCACTTTTCACACAAATATATAACTGATTATTATAATACAAGAAGTAGCATAACCACAGAGATACAGGCCTTATT
CATCACAGATTACAACCAAAAAATAAGAAAAATATCAAATGCTTCGATAAATAAGCTCGTAGCGAAGTATTCAGAAGCCT
ATAAAATTCGAGTGACACCTCATACACTAAGGCATACATTCGCAACAAGACTTTATAATGTCAGTCACTCTCAAGTACTT
GTCAGCAATCAACTAGGCCATTCCTCAACTAAACCTACTGAGTTATATACCCACATCGTCAGCGCTGAAGCTAAAGATGC
GTTAAGAAAGTTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(185-339)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

45.272

99.43

0.45

Multiple sequence alignment