Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AN206_RS16090 Genome accession   NZ_CP012625
Coordinates   3140831..3141460 (-) Length   209 a.a.
NCBI ID   WP_000839137.1    Uniprot ID   -
Organism   Escherichia coli strain SF-468     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3135831..3146460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AN206_RS16075 (AN206_16100) helD 3136073..3138127 (-) 2055 WP_001350178.1 DNA helicase IV -
  AN206_RS16080 (AN206_16105) yccF 3138250..3138696 (+) 447 WP_001261236.1 YccF domain-containing protein -
  AN206_RS16085 (AN206_16110) yccS 3138706..3140868 (+) 2163 WP_000875041.1 YccS family putative transporter -
  AN206_RS16090 (AN206_16115) sxy/tfoX 3140831..3141460 (-) 630 WP_000839137.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AN206_RS16095 (AN206_16120) sulA 3141679..3142188 (+) 510 WP_000287750.1 SOS-induced cell division inhibitor SulA -
  AN206_RS16105 (AN206_16130) ompA 3142544..3143584 (+) 1041 WP_001350588.1 porin OmpA -
  AN206_RS16110 (AN206_16135) matP 3143662..3144114 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  AN206_RS16115 (AN206_16140) ycbZ 3144300..3146060 (+) 1761 WP_000156501.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24055.99 Da        Isoelectric Point: 9.4081

>NTDB_id=155828 AN206_RS16090 WP_000839137.1 3140831..3141460(-) (sxy/tfoX) [Escherichia coli strain SF-468]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAGLE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=155828 AN206_RS16090 WP_000839137.1 3140831..3141460(-) (sxy/tfoX) [Escherichia coli strain SF-468]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGTACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGGACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

98.565

100

0.986

Multiple sequence alignment