Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   LLUC06_RS10525 Genome accession   NZ_CP015902
Coordinates   2115331..2117172 (-) Length   613 a.a.
NCBI ID   WP_021722621.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain UC06     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2110331..2122172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC06_RS10515 (LLUC06_2050) - 2114016..2114888 (-) 873 WP_021722623.1 hypothetical protein -
  LLUC06_RS10520 (LLUC06_2051) - 2114904..2115236 (-) 333 WP_021722622.1 hypothetical protein -
  LLUC06_RS10525 (LLUC06_2052) clpC 2115331..2117172 (-) 1842 WP_021722621.1 AAA family ATPase Regulator
  LLUC06_RS10530 (LLUC06_2053) - 2117165..2117854 (-) 690 WP_021722620.1 hypothetical protein -
  LLUC06_RS10535 (LLUC06_2054) - 2117854..2119650 (-) 1797 WP_050573385.1 DNA topoisomerase -
  LLUC06_RS10540 (LLUC06_2055) - 2119643..2119846 (-) 204 WP_021722618.1 hypothetical protein -
  LLUC06_RS10545 (LLUC06_2056) - 2119945..2121684 (-) 1740 WP_081213684.1 toprim domain-containing protein -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 68851.55 Da        Isoelectric Point: 5.7317

>NTDB_id=155805 LLUC06_RS10525 WP_021722621.1 2115331..2117172(-) (clpC) [Lactococcus lactis subsp. lactis strain UC06]
MSDTPFLDKYTENLTEKVLRKIDSFKLVGRDKEVDDVFAALSCMTKNSPILVGDAGVGKTAIAEGIAARIVRGEINSQFL
DVVVRNLELATLMSDEGGGFIIKFKSIIKELKENKADNLLFIDEIHTIMGAGRIQGALDAANVIKPVLSRGEIQLIGATT
ADEFHDYIEEDEAMERRFQKIIVNEPSAEETVEILEGIREKYEKFHNVKIKNSAIKSSVLLAERYIPELNFPDKALDLID
GACARARLRGQKIITEKAIALMIQGLKGIPVTTILKEESTRLDEVEDVLKLRVKGQNQAVRDVANAVTIARAGMQNNNRP
LASFMFLGPTGVGKTELAKALTEAMFDDEHSMIRLDMSEYSQEGSSEKMLGSRKTKGILTEAVKMKPYSVILLDEIEKGN
REVHDLLLQILDDGRLTDGRGRLISFKNTIIIMTTNSGAEMIKNNAEIMGTELSERDQMQFLQRITNALMTDFRPEFLNR
IGDKIIFNMLDKETIREIAIKNIEILQKRMKKQKAYLLYDDKLLDYLVDNGSDKSNGARPIERFITKKLTAEVSKILLEH
RGNEEALFITVRVKGEAPSLTEALERRTLIFSVESEQLKKQKILQYGCDTTKT

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=155805 LLUC06_RS10525 WP_021722621.1 2115331..2117172(-) (clpC) [Lactococcus lactis subsp. lactis strain UC06]
ATGAGTGATACACCATTCTTAGACAAATACACAGAAAATCTAACAGAAAAAGTGTTACGAAAAATTGATAGCTTTAAGCT
TGTTGGTCGTGATAAAGAAGTTGACGATGTTTTTGCAGCATTATCCTGCATGACAAAAAATAGTCCCATTTTAGTGGGTG
ATGCAGGGGTTGGAAAAACAGCGATTGCTGAAGGGATTGCGGCAAGAATTGTTCGTGGTGAAATTAATTCACAATTTTTG
GATGTAGTTGTCCGAAATTTAGAACTTGCGACGCTGATGAGTGATGAAGGTGGCGGATTTATTATCAAATTCAAGAGTAT
CATTAAAGAATTGAAAGAAAATAAAGCAGATAATTTACTTTTCATTGATGAAATCCATACAATAATGGGAGCTGGACGTA
TTCAAGGTGCTCTTGATGCTGCAAATGTTATTAAGCCTGTCCTTTCTCGTGGGGAGATTCAGTTAATTGGTGCTACCACA
GCAGATGAATTTCATGATTATATTGAAGAAGATGAAGCAATGGAGCGACGATTTCAGAAAATTATTGTCAATGAACCTAG
TGCCGAAGAAACCGTAGAAATTTTAGAAGGAATTCGAGAAAAATACGAAAAATTTCATAATGTCAAAATCAAAAACTCTG
CGATAAAAAGTAGCGTTTTACTTGCAGAACGTTATATTCCTGAATTGAACTTCCCTGATAAAGCTCTTGATCTTATTGAT
GGTGCTTGTGCTAGAGCAAGACTTAGAGGACAAAAAATAATTACTGAAAAAGCGATTGCTTTAATGATTCAAGGATTGAA
AGGAATCCCTGTTACAACTATTTTAAAAGAGGAAAGTACACGCTTAGACGAAGTAGAAGATGTTTTAAAATTGCGTGTTA
AAGGACAAAATCAAGCTGTTCGTGATGTGGCAAACGCAGTAACTATTGCAAGAGCAGGAATGCAGAATAACAATCGTCCC
TTAGCTTCTTTCATGTTTTTAGGTCCGACAGGAGTAGGAAAGACAGAACTTGCTAAAGCACTTACAGAAGCTATGTTTGA
TGATGAACATAGTATGATCCGATTAGATATGAGTGAATATTCTCAGGAAGGCTCTTCTGAAAAAATGCTAGGTTCACGAA
AAACAAAAGGAATATTGACGGAAGCAGTCAAAATGAAACCCTACTCTGTCATTTTACTTGATGAAATTGAGAAAGGAAAT
CGTGAAGTTCATGATTTACTACTTCAAATTTTGGATGATGGACGTTTGACAGACGGAAGAGGACGATTGATTTCTTTTAA
GAACACAATTATTATCATGACCACTAACTCTGGAGCGGAGATGATAAAAAATAATGCGGAGATTATGGGAACAGAACTTT
CTGAACGTGATCAAATGCAATTTTTACAACGCATCACAAATGCTTTGATGACAGATTTTCGTCCTGAATTTTTGAATCGT
ATTGGTGATAAAATTATTTTTAATATGCTGGATAAAGAAACGATACGTGAAATTGCAATTAAAAATATTGAAATTCTTCA
GAAACGCATGAAAAAACAAAAAGCTTATCTCTTATATGATGATAAGTTGTTGGATTATCTTGTAGATAATGGCTCAGATA
AAAGTAATGGGGCACGTCCAATTGAGCGATTTATTACCAAGAAATTGACGGCTGAGGTATCCAAAATTCTTCTAGAACAT
CGAGGAAACGAAGAAGCGCTTTTCATTACTGTTCGAGTCAAAGGAGAGGCGCCTTCACTGACAGAAGCCTTGGAACGACG
AACATTAATATTTTCTGTAGAAAGTGAGCAACTTAAAAAGCAGAAAATATTGCAATATGGTTGCGACACAACAAAAACGT
AA

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(319-481)

AAA lid domain (AAA_lid_9)

(187-255)

ATPase family associated with various cellular activities (AAA) (AAA)

(50-182)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(490-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Bacillus subtilis subsp. subtilis str. 168

39.81

100

0.411
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

38.462

100

0.392
  clpE Streptococcus mutans UA159

37.842

100

0.383
  clpE Streptococcus pneumoniae TIGR4

37.601

100

0.378
  clpE Streptococcus pneumoniae D39

37.439

100

0.377
  clpE Streptococcus pneumoniae R6

37.439

100

0.377
  clpE Streptococcus pneumoniae Rx1

37.439

100

0.377
  clpC Streptococcus mutans UA159

37.811

98.369

0.372
  clpC Streptococcus thermophilus LMG 18311

37.748

98.532

0.372
  clpC Streptococcus thermophilus LMD-9

37.748

98.532

0.372
  clpC Streptococcus pneumoniae TIGR4

37.274

99.347

0.37
  clpC Streptococcus pneumoniae Rx1

37.274

99.347

0.37
  clpC Streptococcus pneumoniae D39

37.274

99.347

0.37
  clpC Lactococcus lactis subsp. cremoris KW2

36.408

100

0.367

Multiple sequence alignment