Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   AMQ28_RS09330 Genome accession   NZ_CP012608
Coordinates   1966047..1966373 (+) Length   108 a.a.
NCBI ID   WP_053579359.1    Uniprot ID   -
Organism   Acinetobacter sp. TTH0-4     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1961047..1971373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMQ28_RS09305 (AMQ28_09310) hemC 1961726..1962643 (+) 918 WP_053579354.1 hydroxymethylbilane synthase -
  AMQ28_RS09310 (AMQ28_09315) - 1962644..1963423 (+) 780 WP_053579355.1 uroporphyrinogen-III synthase -
  AMQ28_RS09315 (AMQ28_09320) - 1963420..1964262 (+) 843 WP_053579356.1 hypothetical protein -
  AMQ28_RS09320 (AMQ28_09325) - 1964270..1965463 (+) 1194 WP_053579357.1 hypothetical protein -
  AMQ28_RS09325 (AMQ28_09330) - 1965475..1965903 (+) 429 WP_053579358.1 acyl-CoA thioesterase -
  AMQ28_RS09330 (AMQ28_09335) hns 1966047..1966373 (+) 327 WP_053579359.1 H-NS family nucleoid-associated regulatory protein Regulator
  AMQ28_RS09335 (AMQ28_09340) gspN 1966544..1967290 (+) 747 WP_053579360.1 type II secretion system protein N -
  AMQ28_RS09340 (AMQ28_09345) - 1967287..1968132 (+) 846 WP_053579361.1 type II secretion system protein N -
  AMQ28_RS09345 (AMQ28_09350) gspD 1968172..1970439 (+) 2268 WP_053579362.1 type II secretion system secretin GspD -
  AMQ28_RS09350 (AMQ28_09355) - 1970509..1971237 (+) 729 WP_053579363.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12202.96 Da        Isoelectric Point: 6.4156

>NTDB_id=155763 AMQ28_RS09330 WP_053579359.1 1966047..1966373(+) (hns) [Acinetobacter sp. TTH0-4]
MMPDISNLSVEELKRLQVEAEALIVSKKDQAIEDAYQKIADIADDVGLSIEQILEFGATKRKKTVRKSVEPRYRSKNNGA
DTWTGRGKKPRWLVAELENGAKLDDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=155763 AMQ28_RS09330 WP_053579359.1 1966047..1966373(+) (hns) [Acinetobacter sp. TTH0-4]
ATGATGCCAGATATTAGTAATTTATCTGTTGAAGAGTTAAAGCGTTTGCAAGTTGAAGCAGAAGCGTTAATTGTCTCTAA
AAAAGATCAAGCGATTGAAGATGCTTATCAAAAAATTGCAGATATTGCTGATGACGTAGGTTTGTCGATTGAACAAATTT
TAGAGTTTGGTGCGACTAAACGTAAAAAGACGGTTCGTAAATCTGTAGAGCCACGTTATCGCAGTAAAAATAATGGAGCA
GACACTTGGACTGGTCGTGGCAAAAAACCACGTTGGTTGGTTGCAGAGCTAGAAAATGGTGCAAAATTGGATGATTTTTT
GATTTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

78.704

100

0.787

Multiple sequence alignment