Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   AMQ28_RS07050 Genome accession   NZ_CP012608
Coordinates   1499633..1500844 (+) Length   403 a.a.
NCBI ID   WP_053579007.1    Uniprot ID   -
Organism   Acinetobacter sp. TTH0-4     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 1494633..1505844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMQ28_RS07030 (AMQ28_07035) - 1495140..1497203 (-) 2064 WP_053580270.1 TonB-dependent copper receptor -
  AMQ28_RS07035 (AMQ28_07040) - 1497293..1497718 (-) 426 WP_053579004.1 DUF2946 family protein -
  AMQ28_RS07040 (AMQ28_07045) def 1497808..1498338 (-) 531 WP_053579005.1 peptide deformylase -
  AMQ28_RS07045 (AMQ28_07050) tsaP 1498458..1499612 (+) 1155 WP_053579006.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  AMQ28_RS07050 (AMQ28_07055) dprA 1499633..1500844 (+) 1212 WP_053579007.1 DNA-processing protein DprA Machinery gene
  AMQ28_RS07055 (AMQ28_07060) - 1500887..1501456 (+) 570 WP_053579008.1 L-threonylcarbamoyladenylate synthase -
  AMQ28_RS07060 (AMQ28_07065) - 1501826..1502734 (-) 909 WP_053579009.1 DMT family transporter -
  AMQ28_RS07065 (AMQ28_07070) - 1502884..1503657 (+) 774 WP_053579010.1 AraC family transcriptional regulator -
  AMQ28_RS07070 (AMQ28_07075) - 1503829..1504362 (+) 534 WP_053579011.1 hypothetical protein -
  AMQ28_RS07075 (AMQ28_07080) - 1504520..1505065 (+) 546 WP_053579012.1 glutathione peroxidase -

Sequence


Protein


Download         Length: 403 a.a.        Molecular weight: 45228.55 Da        Isoelectric Point: 6.9357

>NTDB_id=155758 AMQ28_RS07050 WP_053579007.1 1499633..1500844(+) (dprA) [Acinetobacter sp. TTH0-4]
MLNPLSETQVSTITLWYLVQHSLSSFYKLEKYFGTVSQAVDPKNFSQWSTLALHKNHLQRLSEFQTEVGQQKFKNLIQNI
QKHTDFILTLDQPDYPAQLLPYTNKPPILFGQGNAQALLQPQIAIVGSRKPSTHGRQVAYDFAYYLSDQGFYVTSGLAEG
IDEAAHQGALRHNRTIAVMGTGLDQTYPSLHQQLRQHIIAQSGTIITEYLPETLPLKQHFPRRNWIVSALSLGVIVAEAA
LKSGSLITAKWAAEQGKLIFAIPGHIYSEHHQGCHQLIREGAILVDHPEQVVEDLALPTQWQCQQRNDQTQIINQISTKE
SQAVQQLSAVSSSVQPSPLNQIHIPQNLLSLYNQLDWIGQSIDDLIIKLNLDISTLTSQLMELELLGLCMQQGGLYLRCR
ASK

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=155758 AMQ28_RS07050 WP_053579007.1 1499633..1500844(+) (dprA) [Acinetobacter sp. TTH0-4]
ATGTTGAACCCTTTATCCGAGACGCAAGTTTCCACAATTACGTTATGGTATTTGGTTCAGCATTCTCTTTCGAGTTTTTA
TAAATTAGAAAAATATTTTGGTACAGTGTCACAAGCAGTTGATCCAAAAAACTTTTCTCAATGGTCGACTCTTGCGCTGC
ATAAAAATCACTTACAGCGTCTCAGTGAATTTCAAACTGAAGTTGGCCAACAAAAATTTAAAAACTTAATTCAAAATATT
CAAAAACATACTGATTTCATTTTAACCTTGGATCAGCCCGACTATCCGGCCCAACTGTTGCCCTATACAAACAAACCACC
GATTCTTTTTGGTCAAGGCAATGCGCAAGCTTTACTACAGCCTCAAATCGCGATAGTCGGCAGTCGCAAACCCAGTACAC
ATGGACGACAAGTGGCTTATGATTTTGCTTACTACTTAAGTGATCAAGGTTTTTATGTGACGAGTGGTTTAGCCGAAGGT
ATTGATGAAGCAGCACATCAAGGGGCTTTACGGCATAATCGTACTATTGCTGTAATGGGCACAGGACTGGATCAAACCTA
CCCAAGTCTACATCAGCAGCTAAGACAGCATATTATTGCCCAATCAGGGACGATTATTACTGAATATTTACCCGAGACAC
TCCCATTAAAACAACATTTTCCACGGCGCAACTGGATTGTCAGTGCTTTAAGTCTCGGAGTCATTGTTGCAGAAGCGGCA
CTCAAAAGTGGTTCACTCATCACAGCCAAATGGGCCGCTGAACAAGGTAAATTAATTTTTGCGATTCCGGGTCATATTTA
TAGCGAACACCACCAAGGCTGCCATCAACTGATTCGTGAAGGTGCTATTTTAGTTGATCATCCTGAACAGGTGGTTGAAG
ATCTGGCGCTTCCAACCCAATGGCAATGTCAGCAAAGAAATGATCAAACACAAATTATAAATCAGATTTCAACCAAAGAA
AGTCAAGCCGTACAGCAACTCTCAGCGGTATCAAGCTCTGTCCAGCCCTCTCCACTAAACCAAATACACATTCCTCAAAA
TTTGCTCTCGCTTTATAACCAGCTCGACTGGATTGGACAATCGATTGATGATCTGATTATTAAACTAAATTTAGATATCA
GTACGTTAACCAGTCAACTCATGGAGCTGGAATTACTCGGTTTGTGTATGCAACAAGGTGGTTTGTATCTACGTTGTCGT
GCAAGCAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

62.594

99.504

0.623

  dprA Acinetobacter baumannii D1279779

62.095

99.504

0.618

  dprA Acinetobacter baylyi ADP1

58.603

99.504

0.583


Multiple sequence alignment