Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   AMQ28_RS06420 Genome accession   NZ_CP012608
Coordinates   1352885..1355107 (+) Length   740 a.a.
NCBI ID   WP_053578900.1    Uniprot ID   A0A0M4HB57
Organism   Acinetobacter sp. TTH0-4     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1347885..1360107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMQ28_RS06395 (AMQ28_06400) - 1347954..1348793 (+) 840 WP_053578895.1 HlyC/CorC family transporter -
  AMQ28_RS06400 (AMQ28_06405) lnt 1348790..1350349 (+) 1560 WP_053578896.1 apolipoprotein N-acyltransferase -
  AMQ28_RS06405 (AMQ28_06410) - 1350439..1350774 (-) 336 WP_053578897.1 hypothetical protein -
  AMQ28_RS06410 (AMQ28_06415) gspG 1351051..1351488 (-) 438 WP_053578898.1 type II secretion system major pseudopilin GspG -
  AMQ28_RS06415 (AMQ28_06420) gspF 1351528..1352733 (-) 1206 WP_053578899.1 type II secretion system inner membrane protein GspF -
  AMQ28_RS06420 (AMQ28_06425) priA 1352885..1355107 (+) 2223 WP_053578900.1 primosomal protein N' Machinery gene
  AMQ28_RS06425 (AMQ28_06430) - 1355167..1357005 (+) 1839 WP_053578901.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  AMQ28_RS06430 (AMQ28_06435) - 1357056..1357931 (+) 876 WP_053578902.1 Hsp33 family molecular chaperone HslO -
  AMQ28_RS06435 (AMQ28_06440) - 1358377..1359321 (+) 945 WP_053578903.1 sensor domain-containing diguanylate cyclase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 84012.25 Da        Isoelectric Point: 9.3074

>NTDB_id=155749 AMQ28_RS06420 WP_053578900.1 1352885..1355107(+) (priA) [Acinetobacter sp. TTH0-4]
MPNSSSTLSSIYRIRVAVPVPVYDCFDYMLSAEQYQQAELGARVAVSFGRQNLVGIIVEKLSSDTPIDPRFKLKAISELL
DEQAILDAKILSLLTWSAQYYQFPIGEVFQSALPAFLRQGKPYNLLARMWKVVDLNAEAKVTRSEKQQNAYKILKLHPSG
TTENILNLAGIETATLKALEKKVIIECVLENQDFRPQPVTLAQMPLIPNQDQKKAIQHILKAQNKYQAFLLDGLTGSGKT
EVYLQVMQEVLKQGKQVLVLVPEIGLTPQTISRFQSRFHGHIVLLHSGLNDSKRLQAWQSAQTGKASIILGTRSAIYTPL
PNLGLIILDEEHDLSFKQQEGFRYHARDVAMYRAHLHSCPIILGSATPSIESYALVSSGKMTNLELNQRAGVALMPKIHL
IDLKIAQKQNGVSQTLIDEIQKRLDKKEQVLVFLNRRGYAPVLICESCAWQAKCPHCDANFTVHRQPYQHLHCHHCGSIH
RMPEHCPQCKHTELKSIGMGTAKVEEHLQQLFPKFDVIRVDRDSTSRIGSWQKIYDKIQKSEPIILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRATERTAQLIIQVAGRAGRGEHKGEVYLQTLRPDHPLLNTLIHKDYRHFAHQTLKERQAALL
PPFRYAVLIRCESKSQEQNQEFLQQHAQVLKHSSENLIDIWGPIPAPMERKAGRYQAHMVLLSVDRARLHFYIRAWWQNM
LHQKPSTMKLTLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=155749 AMQ28_RS06420 WP_053578900.1 1352885..1355107(+) (priA) [Acinetobacter sp. TTH0-4]
ATGCCAAATTCAAGCTCGACTTTATCCAGTATTTACCGCATTCGTGTCGCAGTGCCAGTCCCTGTGTATGACTGCTTTGA
CTACATGCTCAGCGCAGAACAATATCAGCAAGCGGAACTAGGCGCACGTGTTGCTGTCTCATTTGGACGTCAAAATCTGG
TCGGCATTATTGTTGAAAAATTAAGCAGTGATACTCCTATCGACCCACGCTTTAAACTTAAAGCGATTAGCGAATTGCTG
GATGAACAGGCTATTTTAGATGCAAAAATTTTAAGTTTACTAACGTGGTCAGCACAATATTATCAATTCCCGATCGGTGA
AGTTTTTCAAAGTGCCTTACCTGCTTTTTTACGTCAGGGCAAACCGTATAATTTATTGGCACGTATGTGGAAGGTTGTGG
ACTTAAATGCTGAAGCCAAAGTCACACGTTCAGAAAAACAACAAAATGCCTATAAAATTCTGAAATTACACCCATCAGGC
ACCACAGAGAATATTTTAAATTTAGCAGGTATTGAAACTGCCACGCTGAAAGCGTTAGAAAAAAAAGTTATTATTGAATG
TGTCTTGGAAAATCAAGATTTTCGGCCTCAGCCCGTGACCTTGGCTCAAATGCCATTGATCCCCAATCAAGATCAAAAGA
AAGCCATTCAACACATTTTAAAAGCACAAAATAAATATCAGGCTTTTTTACTGGATGGCTTAACGGGCAGTGGTAAAACC
GAAGTCTATTTACAAGTGATGCAAGAAGTACTGAAACAAGGCAAACAGGTGTTGGTTTTAGTGCCCGAAATTGGACTGAC
CCCACAAACCATTAGCCGTTTTCAGTCGCGCTTCCATGGCCATATTGTACTGTTACATTCAGGACTGAATGACTCAAAAC
GTTTACAAGCTTGGCAGTCAGCACAGACTGGCAAAGCTTCCATTATTTTGGGAACACGTTCAGCTATTTATACCCCATTG
CCTAATTTGGGATTAATTATTTTAGATGAAGAGCATGACCTGTCTTTTAAACAACAAGAGGGTTTTCGCTATCATGCGCG
CGATGTAGCAATGTATCGTGCACACTTACACAGTTGCCCCATTATTTTAGGTTCAGCCACACCGAGTATTGAAAGTTATG
CGCTGGTCAGTTCGGGCAAAATGACCAACTTAGAATTGAATCAGCGCGCAGGTGTTGCGCTCATGCCAAAAATTCATTTA
ATTGATTTGAAAATTGCGCAAAAACAAAACGGCGTGAGTCAAACCTTAATTGATGAAATTCAAAAACGTTTAGATAAAAA
AGAACAAGTCTTGGTGTTTTTAAATCGACGTGGTTATGCACCTGTGTTGATTTGTGAGAGTTGTGCATGGCAAGCCAAAT
GTCCACATTGCGATGCCAATTTTACGGTACACCGTCAACCTTACCAGCATTTACATTGTCATCATTGTGGCAGTATTCAT
CGTATGCCAGAGCATTGCCCACAATGTAAGCATACTGAGCTCAAATCAATTGGCATGGGAACAGCCAAGGTTGAAGAACA
CTTACAACAGTTATTTCCAAAATTTGATGTCATTCGCGTAGATCGTGACTCCACCAGCCGGATTGGAAGTTGGCAAAAAA
TTTATGACAAAATTCAAAAAAGTGAACCCATTATTTTACTAGGAACTCAAATGCTGGCCAAAGGGCACCATTTTCCATAC
GTGACTTTGGTGGCGATTTTGGATATTGATTCAGGTTTACTCAGTGTCGATTTTCGTGCCACCGAACGTACAGCACAACT
GATTATACAAGTAGCAGGTCGTGCAGGACGTGGGGAACATAAAGGTGAAGTGTATTTACAGACCTTAAGACCAGATCATC
CATTACTGAATACTTTAATTCACAAAGATTACCGTCATTTTGCTCACCAAACTTTAAAAGAACGGCAAGCTGCACTTTTA
CCGCCTTTTCGATATGCTGTCCTCATTCGTTGCGAGTCTAAAAGTCAGGAACAAAATCAAGAATTTTTACAACAACACGC
TCAAGTGTTAAAACACAGTTCTGAAAATCTAATTGATATTTGGGGGCCTATTCCAGCCCCGATGGAACGTAAAGCGGGGC
GTTATCAGGCACATATGGTGTTGTTATCCGTAGATCGTGCCCGATTACATTTTTATATTCGCGCTTGGTGGCAAAATATG
TTGCATCAAAAGCCATCAACCATGAAACTGACCCTAGATATAGACCCTCAGGAATTAAGTTAA

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

DEAD/DEAH box helicase (DEAD)

(210-371)

Primosomal protein N C-terminal domain (PriA_C)

(642-736)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M4HB57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

72.071

99.189

0.715

Multiple sequence alignment