Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LLUC06_RS01725 Genome accession   NZ_CP015902
Coordinates   329521..331398 (+) Length   625 a.a.
NCBI ID   WP_033900385.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain UC06     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 324521..336398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC06_RS01705 (LLUC06_0324) - 324710..325987 (-) 1278 WP_081213338.1 NAD(P)/FAD-dependent oxidoreductase -
  LLUC06_RS01710 (LLUC06_0325) - 326128..326955 (+) 828 WP_012897079.1 NAD(P)H-hydrate dehydratase -
  LLUC06_RS01715 (LLUC06_0326) - 327105..327518 (+) 414 WP_081213339.1 DUF1398 domain-containing protein -
  LLUC06_RS01720 (LLUC06_0327) rcrP 327689..329524 (+) 1836 WP_081213340.1 ABC transporter ATP-binding protein Regulator
  LLUC06_RS01725 (LLUC06_0328) rcrQ 329521..331398 (+) 1878 WP_033900385.1 ABC transporter ATP-binding protein Regulator
  LLUC06_RS01730 (LLUC06_0329) - 331495..332148 (+) 654 WP_010905251.1 YcjF family protein -
  LLUC06_RS01735 (LLUC06_0330) - 332194..333213 (-) 1020 WP_017864067.1 Gfo/Idh/MocA family oxidoreductase -
  LLUC06_RS01740 (LLUC06_0331) - 333197..333364 (-) 168 WP_003131184.1 hypothetical protein -
  LLUC06_RS01745 (LLUC06_0332) - 333552..334028 (-) 477 WP_003131187.1 S-ribosylhomocysteine lyase -
  LLUC06_RS01750 (LLUC06_0333) - 334242..334706 (+) 465 WP_081213341.1 GyrI-like domain-containing protein -
  LLUC06_RS01755 (LLUC06_0334) - 334771..335616 (+) 846 WP_003131189.1 aldo/keto reductase -
  LLUC06_RS01760 (LLUC06_0335) - 335782..336294 (+) 513 WP_023189990.1 cysteine hydrolase family protein -

Sequence

Protein


Download         Length: 625 a.a.        Molecular weight: 70285.14 Da        Isoelectric Point: 8.7506

>NTDB_id=155744 LLUC06_RS01725 WP_033900385.1 329521..331398(+) (rcrQ) [Lactococcus lactis subsp. lactis strain UC06]
MMRGNYLNRGGKGADRFQKGRRAQNFFPTIIRLFKYMRRDLWGLLFSILIASLSVILSVQAPKILGNATTVIFDGVTKSL
KNHTAIQIDMTKVESILLYVMVIYLISFISGILQQSIMTRISQRTVYTLRREFKNKMKKLPVSYYDSHSNGDIMSRMIND
MDNISGTLNQTLIQLITSLLQFVGTIYFMLTISWQLALVAFITVPLAMITVRIVAPLSQKFFAEQQKNLGLLNDQIEENY
AGHAVIKTFNHEASAEKEFAKRNDNFYKSAWKAQFVSTLIYPTMRFINNLDYLAMAVIGGLKVISGTVNLGDVQAMLQYT
NQFAQPITNISNMLNTIQATVASAERIFEVLDEKEMTDGIPVSEKVADESSKKAVSNLGATDKTDFINFDQVAFSYNENQ
SLMTDVNFSVEVGQMIAIVGPTGAGKTTMINLLERFYDVTSGKILLEGKDIREIDREQLRGRMAMVLQETWLFSGTIMDN
LQYGRLEATQEEVIQAAKMAHADEFITTLPQGYQTLLNEAASNISQGQRQLLTIARAFLANPEILILDEATSSVDTRTER
LIQSAMNRLLKGRTSFVVAHRLSTIRDANQILVMENGNIVEMGNHESLLKENGLYASLYNSQFAK

Nucleotide


Download         Length: 1878 bp        

>NTDB_id=155744 LLUC06_RS01725 WP_033900385.1 329521..331398(+) (rcrQ) [Lactococcus lactis subsp. lactis strain UC06]
ATGATGAGAGGAAATTATCTCAATCGAGGTGGCAAAGGGGCTGACCGTTTTCAAAAAGGTCGGCGAGCTCAAAATTTCTT
TCCAACGATTATTCGACTTTTCAAATATATGCGCAGAGATTTATGGGGACTTCTTTTTTCAATTTTAATTGCTTCGCTGT
CAGTCATTTTGTCGGTTCAGGCACCCAAAATTTTGGGAAATGCAACCACAGTGATATTTGATGGCGTAACAAAAAGTCTA
AAAAACCATACCGCAATTCAAATTGACATGACTAAGGTCGAATCTATTTTGCTTTATGTCATGGTCATTTATCTGATTTC
ATTTATCTCTGGGATTTTGCAACAAAGCATTATGACACGCATTTCGCAACGAACAGTTTATACTTTACGTCGTGAATTTA
AAAACAAAATGAAAAAATTGCCAGTTTCATATTATGATAGTCATAGTAATGGGGATATCATGAGTCGAATGATAAATGAT
ATGGATAATATTTCAGGGACTTTAAATCAAACTTTGATTCAGCTTATCACAAGTCTCTTGCAATTTGTTGGAACTATTTA
TTTCATGTTGACCATCTCTTGGCAGTTGGCACTCGTCGCCTTTATCACAGTTCCTTTGGCAATGATTACGGTAAGGATTG
TTGCACCTTTATCGCAAAAATTCTTTGCTGAACAACAAAAAAATCTGGGATTATTGAATGACCAAATTGAAGAAAATTAT
GCAGGACATGCGGTCATTAAAACATTCAATCATGAAGCCTCAGCTGAAAAAGAATTCGCAAAAAGAAATGATAATTTTTA
TAAATCAGCTTGGAAAGCTCAATTTGTATCGACTTTGATTTATCCAACCATGCGATTTATCAATAATTTAGATTACTTAG
CCATGGCCGTAATTGGTGGTCTTAAAGTTATTTCAGGGACGGTTAATCTCGGAGATGTTCAAGCCATGTTGCAATATACC
AATCAATTTGCACAGCCAATCACAAATATCTCGAATATGCTCAATACCATTCAGGCTACAGTTGCGTCAGCCGAACGAAT
TTTTGAAGTATTAGATGAAAAAGAAATGACTGACGGAATTCCTGTCAGTGAAAAAGTTGCTGACGAAAGTTCAAAAAAAG
CTGTCAGTAATTTAGGAGCGACTGACAAGACTGATTTCATCAATTTTGACCAAGTCGCATTTTCTTATAATGAAAATCAA
TCCTTAATGACAGATGTTAATTTTTCCGTTGAAGTTGGGCAAATGATTGCCATTGTGGGACCAACTGGAGCAGGTAAAAC
AACAATGATTAACTTGCTCGAACGATTTTACGATGTCACTTCGGGAAAAATTTTACTTGAAGGAAAAGACATTCGCGAAA
TTGACCGTGAACAATTACGTGGACGAATGGCAATGGTTTTACAAGAAACCTGGTTGTTCTCAGGGACAATTATGGATAAT
TTACAGTATGGTCGTCTTGAAGCAACACAAGAAGAAGTGATTCAAGCAGCTAAAATGGCACATGCTGATGAATTTATCAC
CACTTTACCTCAAGGTTATCAAACCCTTTTGAATGAAGCCGCAAGCAATATTTCTCAGGGGCAAAGGCAGTTATTAACCA
TCGCCCGTGCCTTTTTAGCAAATCCAGAAATATTGATTTTGGATGAAGCCACATCCAGTGTAGATACAAGAACGGAGCGC
CTTATTCAATCAGCGATGAATCGTCTATTAAAAGGACGGACAAGCTTTGTCGTTGCTCACCGTTTATCAACTATTCGTGA
TGCCAATCAGATTTTGGTTATGGAAAATGGAAATATTGTGGAAATGGGGAACCATGAAAGTCTCCTTAAAGAAAACGGAT
TATATGCCAGCCTTTATAATTCGCAATTTGCAAAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(404-552)

ABC transporter transmembrane region (ABC_membrane)

(44-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.809

94.88

0.387