Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   AMQ28_RS01685 Genome accession   NZ_CP012608
Coordinates   348254..348880 (-) Length   208 a.a.
NCBI ID   WP_053580214.1    Uniprot ID   -
Organism   Acinetobacter sp. TTH0-4     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 343254..353880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMQ28_RS01655 (AMQ28_01655) - 343619..344050 (-) 432 WP_053578066.1 SRPBCC family protein -
  AMQ28_RS01660 (AMQ28_01660) tadA 344110..344631 (-) 522 WP_053578067.1 tRNA adenosine(34) deaminase TadA -
  AMQ28_RS01665 (AMQ28_01665) - 344628..345758 (-) 1131 WP_053578068.1 enoyl-CoA hydratase/isomerase family protein -
  AMQ28_RS01670 (AMQ28_01670) ung 345755..346468 (-) 714 WP_053578069.1 uracil-DNA glycosylase -
  AMQ28_RS01675 (AMQ28_01675) - 346514..347110 (-) 597 WP_053578070.1 6-pyruvoyl trahydropterin synthase family protein -
  AMQ28_RS01680 (AMQ28_01680) gspK 347269..348216 (-) 948 WP_053578071.1 type II secretion system minor pseudopilin GspK -
  AMQ28_RS01685 (AMQ28_01685) xcpW 348254..348880 (-) 627 WP_053580214.1 type II secretion system minor pseudopilin GspJ Machinery gene
  AMQ28_RS01690 (AMQ28_01690) xcpV 348961..349350 (-) 390 WP_053580215.1 type II secretion system minor pseudopilin GspI Machinery gene
  AMQ28_RS01695 (AMQ28_01695) - 349451..350011 (-) 561 WP_053578072.1 type II secretion system protein -
  AMQ28_RS01700 (AMQ28_01700) - 350021..350635 (-) 615 WP_053578073.1 TetR/AcrR family transcriptional regulator -
  AMQ28_RS01705 (AMQ28_01705) - 350681..351454 (-) 774 WP_053578074.1 TatD family hydrolase -
  AMQ28_RS01710 (AMQ28_01710) - 351481..351822 (-) 342 WP_053578075.1 PilZ domain-containing protein -
  AMQ28_RS01715 (AMQ28_01715) - 351842..352825 (-) 984 WP_053580216.1 hypothetical protein -
  AMQ28_RS01720 (AMQ28_01720) kdsB 352876..353637 (-) 762 WP_053578076.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24127.36 Da        Isoelectric Point: 6.4980

>NTDB_id=155737 AMQ28_RS01685 WP_053580214.1 348254..348880(-) (xcpW) [Acinetobacter sp. TTH0-4]
MHPRSGFTLVELLVAIAIFAVLSALGWKVFDYLIKVKDRNAEHEINLGQLQEAYQQVLRDTVQTVPLTANVNSDIQPALV
LQNNTFSFSKTGVTDPLQQGISPDERVEYQYRADEKKVYRLKYRYLNRSGRDQPESSVLLRDVDQFEVVVLNPNENTTWP
ESAENLTNNLQKRKLPKGIKIKLKVRDVEYEWIFSLLNTDYLEQRQNN

Nucleotide


Download         Length: 627 bp        

>NTDB_id=155737 AMQ28_RS01685 WP_053580214.1 348254..348880(-) (xcpW) [Acinetobacter sp. TTH0-4]
ATTCATCCTCGTTCAGGTTTTACCTTAGTTGAGTTGTTGGTGGCAATTGCGATTTTTGCAGTGCTTTCGGCATTAGGATG
GAAAGTTTTTGATTATTTGATTAAAGTGAAAGATCGTAATGCTGAACATGAAATAAATTTAGGTCAATTACAAGAAGCCT
ATCAGCAAGTTTTACGTGATACCGTGCAAACAGTGCCTTTAACTGCAAATGTAAATAGTGATATTCAGCCTGCTTTAGTG
TTGCAGAATAATACATTCAGCTTTAGTAAAACAGGGGTAACCGATCCTTTGCAGCAAGGGATTTCCCCTGATGAGCGAGT
AGAATATCAATATCGTGCTGATGAAAAAAAAGTTTATCGCTTAAAGTATCGTTATCTTAATCGGAGTGGGCGTGATCAGC
CTGAATCCAGCGTATTGCTGAGGGATGTAGATCAGTTTGAGGTTGTGGTGTTAAATCCAAATGAAAATACTACATGGCCA
GAATCAGCAGAAAATTTAACTAATAATCTACAGAAGCGGAAGTTACCCAAAGGAATTAAGATTAAGCTGAAAGTGAGAGA
TGTTGAATATGAATGGATCTTTAGTTTATTGAATACAGATTATCTAGAACAGCGCCAGAATAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)

Type II secretion system (T2SS), protein J (T2SSJ)

(61-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

60.784

98.077

0.596

Multiple sequence alignment