Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AMQ28_RS00840 Genome accession   NZ_CP012608
Coordinates   166189..167142 (-) Length   317 a.a.
NCBI ID   WP_053577926.1    Uniprot ID   A0A0M5JKN1
Organism   Acinetobacter sp. TTH0-4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 161189..172142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMQ28_RS00805 (AMQ28_00805) - 161784..162512 (+) 729 Protein_153 GlxA family transcriptional regulator -
  AMQ28_RS00820 (AMQ28_00820) - 163795..164046 (+) 252 Protein_155 helix-turn-helix domain-containing protein -
  AMQ28_RS00825 (AMQ28_00825) - 164550..165140 (+) 591 WP_053577923.1 DUF4385 domain-containing protein -
  AMQ28_RS00830 (AMQ28_00830) - 165407..165670 (+) 264 WP_053577924.1 TIGR03643 family protein -
  AMQ28_RS14305 - 165854..166027 (-) 174 Protein_158 integrase core domain-containing protein -
  AMQ28_RS00835 (AMQ28_00835) - 166014..166196 (-) 183 WP_053577925.1 hypothetical protein -
  AMQ28_RS00840 (AMQ28_00840) ceuB 166189..167142 (-) 954 WP_053577926.1 ABC transporter permease Machinery gene
  AMQ28_RS00845 (AMQ28_00845) - 168257..170419 (+) 2163 WP_053577927.1 TonB-dependent siderophore receptor -
  AMQ28_RS14755 - 170676..170786 (-) 111 WP_092721025.1 hypothetical protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34581.83 Da        Isoelectric Point: 9.6783

>NTDB_id=155736 AMQ28_RS00840 WP_053577926.1 166189..167142(-) (ceuB) [Acinetobacter sp. TTH0-4]
MIKCRYLLALLLPFALISLFVGVGNMSWQGLLNGQMQDWQIFWTSRFPRLMAIVVAGAGLSVCGLIMQTLTRNRFVSPTT
AGLYDCARLGVLVSIILIPTASIFLKTGFAIGVTLLGALAFIGILSTLKHRDTVFVPLVGMIFGSIISAFTTFIALQMDL
LQSLSGWLQGDFSTILNGQYELIYFSVPILVLIYIFANRFLLAGLGEDFAVNLGLNYKKTLFVGLALVSVITGVVIITVG
AIPFLGLIVPNIVSLYLGDNLRKTLPHTALLGALLVLMCDIFGRVVIYPYEIPISLIMGVLGSVIFLALLIRKYRHV

Nucleotide


Download         Length: 954 bp        

>NTDB_id=155736 AMQ28_RS00840 WP_053577926.1 166189..167142(-) (ceuB) [Acinetobacter sp. TTH0-4]
ATGATTAAATGCCGCTACCTGTTGGCTTTATTATTACCGTTTGCGCTGATTTCCTTATTTGTCGGAGTCGGCAATATGAG
TTGGCAAGGCTTATTAAATGGGCAAATGCAAGACTGGCAAATTTTTTGGACCAGTCGTTTTCCACGTTTAATGGCGATCG
TTGTAGCAGGTGCAGGATTAAGTGTTTGTGGGCTAATTATGCAAACATTGACGCGTAATCGTTTTGTATCGCCTACTACA
GCGGGACTTTATGACTGCGCGCGTCTAGGAGTATTGGTTTCAATTATTCTAATCCCTACAGCATCTATATTTTTAAAAAC
TGGATTCGCGATTGGAGTGACTCTGCTTGGTGCATTGGCATTTATAGGAATTTTATCAACATTAAAACATCGAGATACTG
TATTTGTACCATTGGTAGGTATGATTTTTGGCAGCATTATTTCAGCTTTTACTACATTTATTGCATTACAAATGGATTTG
CTACAAAGCCTCTCAGGTTGGTTACAAGGTGATTTTTCCACTATTCTCAATGGACAATATGAACTGATTTATTTCAGTGT
CCCAATACTCGTATTAATTTATATTTTCGCAAACCGATTTCTACTTGCAGGTTTAGGCGAAGATTTTGCTGTTAATCTAG
GCTTAAATTATAAAAAAACCTTATTCGTTGGCTTAGCTTTAGTATCTGTAATCACAGGTGTAGTCATTATTACTGTGGGA
GCAATTCCTTTCCTTGGTCTCATTGTTCCAAATATTGTCAGCTTATATCTAGGCGATAATTTACGTAAAACCTTACCTCA
CACGGCTTTGTTAGGGGCCTTATTGGTACTAATGTGTGACATTTTTGGTAGAGTTGTTATTTATCCTTATGAAATTCCTA
TTAGCTTAATTATGGGCGTATTGGGTAGCGTAATTTTCCTTGCACTACTGATTAGGAAATATCGCCATGTCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(11-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M5JKN1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.641

98.423

0.498

Multiple sequence alignment