Detailed information    

insolico Bioinformatically predicted

Overview

Name   yaaT   Type   Regulator
Locus tag   LL275_RS02265 Genome accession   NZ_CP015897
Coordinates   435008..435790 (+) Length   260 a.a.
NCBI ID   WP_003131572.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain 275     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 430008..440790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL275_RS02240 (LL275_0430) vicX 430031..430843 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  LL275_RS02245 (LL275_0431) vicK 431014..432456 (-) 1443 WP_014570382.1 cell wall metabolism sensor histidine kinase WalK Regulator
  LL275_RS02250 (LL275_0432) yycF 432449..433150 (-) 702 WP_003131580.1 response regulator YycF -
  LL275_RS02255 (LL275_0433) tmk 433328..433963 (+) 636 WP_003131575.1 dTMP kinase -
  LL275_RS02260 (LL275_0434) - 434096..434956 (+) 861 WP_003131573.1 DNA polymerase III subunit delta' -
  LL275_RS02265 (LL275_0435) yaaT 435008..435790 (+) 783 WP_003131572.1 stage 0 sporulation family protein Regulator
  LL275_RS02270 (LL275_0436) yabA 435783..436109 (+) 327 WP_003131570.1 DNA replication initiation control protein YabA -
  LL275_RS02275 (LL275_0437) rsmI 436109..436984 (+) 876 WP_003131568.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LL275_RS02280 (LL275_0438) - 437061..437252 (-) 192 WP_003131566.1 hypothetical protein -
  LL275_RS02285 (LL275_0439) mvk 437315..438247 (-) 933 WP_003131564.1 mevalonate kinase -
  LL275_RS02290 (LL275_0440) mvaD 438553..439509 (+) 957 WP_010905319.1 diphosphomevalonate decarboxylase -
  LL275_RS02295 (LL275_0441) - 439496..440485 (+) 990 WP_003131562.1 mevalonate kinase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 29804.21 Da        Isoelectric Point: 5.4775

>NTDB_id=155666 LL275_RS02265 WP_003131572.1 435008..435790(+) (yaaT) [Lactococcus lactis subsp. lactis strain 275]
MIYEIKFAHGESNVFAISDIELAPQTEVILRSDKGNFYGKIVREISEEANLEIHHTIVREVNEDDLQVIAKLEERSKQAK
DKVRQLVIEQGLEMKIIDVAYNFDQMQLFISFTAENRVDFRLLLRELATTFRIRIELRQIGPRDAAKIHGGLGPCGRPLC
CSEFVYEFPNVSIKMAKNQNLSLKQNELNGLCGRLMCCLTYEDSFYKEAQQLFPDFGEFVTTSEGKGKVVGLNVLKNRVK
IRFGEYSKDFELAEIEVNHG

Nucleotide


Download         Length: 783 bp        

>NTDB_id=155666 LL275_RS02265 WP_003131572.1 435008..435790(+) (yaaT) [Lactococcus lactis subsp. lactis strain 275]
ATGATTTATGAAATAAAATTTGCACATGGCGAATCAAATGTATTTGCAATAAGTGATATAGAACTTGCTCCACAAACAGA
AGTTATCCTTCGTTCAGATAAGGGAAACTTTTACGGAAAAATTGTACGTGAAATTTCTGAAGAAGCGAATCTTGAAATTC
ACCACACGATTGTGCGTGAAGTAAATGAGGATGATCTCCAAGTTATTGCAAAACTTGAAGAACGTTCTAAACAAGCCAAA
GATAAAGTTCGCCAACTTGTCATCGAACAAGGTTTGGAAATGAAAATTATTGATGTTGCTTATAATTTCGACCAAATGCA
ACTTTTTATTTCGTTTACAGCAGAGAATCGTGTTGATTTTCGATTGCTTTTGCGTGAGTTGGCAACAACTTTTAGAATTA
GGATTGAACTTCGCCAAATTGGGCCAAGAGATGCGGCTAAAATTCATGGTGGACTTGGACCTTGTGGACGTCCTTTGTGC
TGTTCTGAGTTTGTTTATGAATTTCCAAATGTTTCAATCAAAATGGCCAAAAATCAAAATCTATCTTTGAAACAAAATGA
ATTGAACGGTCTTTGCGGTCGTTTGATGTGCTGTTTAACTTATGAAGATAGTTTTTATAAAGAAGCCCAACAACTTTTCC
CAGATTTTGGTGAGTTTGTAACTACCTCAGAAGGAAAAGGAAAAGTTGTTGGCTTAAATGTTTTAAAAAATAGAGTAAAA
ATCCGCTTTGGAGAATATAGCAAGGATTTTGAACTTGCAGAAATTGAGGTGAATCATGGCTGA

Domains

Predicted by InterProScan.

PSP1 C-terminal conserved region (PSP1)

(56-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  yaaT Bacillus subtilis subsp. subtilis str. 168

45.662

84.231

0.385

Multiple sequence alignment