Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   LL275_RS00500 Genome accession   NZ_CP015897
Coordinates   87342..88127 (-) Length   261 a.a.
NCBI ID   WP_014570337.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain 275     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 82342..93127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL275_RS00470 (LL275_0080) - 83134..83724 (+) 591 WP_003132255.1 flavin reductase family protein -
  LL275_RS00475 (LL275_0081) - 83760..84062 (-) 303 WP_003132256.1 hypothetical protein -
  LL275_RS00480 (LL275_0082) - 84064..84231 (-) 168 WP_003132257.1 lactococcin family bacteriocin -
  LL275_RS00485 (LL275_0083) rpmG 84795..84944 (-) 150 WP_003132258.1 50S ribosomal protein L33 -
  LL275_RS00490 (LL275_0084) rpmF 84974..85147 (-) 174 WP_010905107.1 50S ribosomal protein L32 -
  LL275_RS00495 (LL275_0085) - 85511..87292 (+) 1782 WP_014570336.1 heavy metal translocating P-type ATPase -
  LL275_RS00500 (LL275_0086) spo0J 87342..88127 (-) 786 WP_014570337.1 ParB/RepB/Spo0J family partition protein Regulator
  LL275_RS00505 (LL275_0087) rarA 88182..89441 (-) 1260 WP_003132263.1 replication-associated recombination protein A Machinery gene
  LL275_RS00510 (LL275_0088) - 89485..89973 (-) 489 WP_012896945.1 GNAT family N-acetyltransferase -
  LL275_RS00515 (LL275_0089) - 90125..90592 (+) 468 WP_003132265.1 DUF3013 family protein -
  LL275_RS00520 (LL275_0090) - 90622..92175 (+) 1554 WP_003132266.1 ABC-F family ATP-binding cassette domain-containing protein -
  LL275_RS00525 (LL275_0091) - 92306..92590 (+) 285 WP_010905114.1 hypothetical protein -
  LL275_RS00530 (LL275_0092) - 92627..93115 (+) 489 WP_003132268.1 YdeI/OmpD-associated family protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 29729.54 Da        Isoelectric Point: 9.5731

>NTDB_id=155652 LL275_RS00500 WP_014570337.1 87342..88127(-) (spo0J) [Lactococcus lactis subsp. lactis strain 275]
MVEQITQLKLSTIVKNPYQPRLVFDEDKLKELANSIQENGVLQPIIVRKSKLVGYELLAGERRFQASKLAGLETIPAIIR
SYSDEEMMTLSILENLQRENLNPLEESKSLAQLADKLGMTHDQIAKALGKSRSYVSNLIRLLGLPDTTLKHVENRDISPA
HARTLLAEKNPKKQLELVDKIIKEQLNVRALEAIIYGEEKVTDKSVSKLNINLFTDETEKELMKKLGNRVKIQANKKYQG
NLSIHFDNLDELEHLIKLLKK

Nucleotide


Download         Length: 786 bp        

>NTDB_id=155652 LL275_RS00500 WP_014570337.1 87342..88127(-) (spo0J) [Lactococcus lactis subsp. lactis strain 275]
ATGGTAGAACAAATCACTCAACTTAAGTTGTCAACAATTGTAAAAAACCCTTACCAGCCTCGTCTTGTTTTTGATGAGGA
TAAATTAAAAGAATTGGCTAATTCTATCCAAGAAAATGGCGTTTTACAACCCATAATCGTTCGTAAATCAAAACTTGTTG
GCTATGAGCTTTTAGCAGGTGAACGTCGGTTTCAAGCTTCAAAATTAGCTGGTTTAGAAACTATACCAGCAATTATTAGA
AGCTATTCTGATGAAGAAATGATGACTCTCTCAATTTTAGAAAATTTGCAGAGAGAAAATCTCAATCCACTAGAAGAGTC
CAAAAGCTTGGCACAACTGGCTGACAAATTGGGAATGACCCACGATCAAATCGCTAAGGCCCTTGGAAAATCAAGGTCTT
ATGTCTCTAATCTTATTCGTTTACTTGGTTTGCCTGACACAACTTTGAAGCATGTTGAAAATCGAGATATTTCACCTGCT
CACGCTAGAACACTTTTAGCTGAAAAAAATCCTAAAAAGCAATTAGAGCTCGTTGATAAAATAATTAAAGAGCAGCTCAA
TGTCAGAGCACTTGAAGCTATTATTTATGGTGAAGAAAAAGTTACTGACAAATCTGTCAGTAAATTAAATATCAATCTTT
TTACTGACGAAACTGAAAAAGAACTGATGAAAAAATTGGGAAATAGGGTTAAGATTCAAGCAAATAAAAAATATCAAGGG
AATTTATCCATTCATTTTGATAATCTTGATGAACTGGAACATCTAATAAAATTACTAAAAAAATAA

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-95)

HTH domain found in ParB protein (HTH_ParB)

(150-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

47.656

98.084

0.467