Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AT729_RS11970 Genome accession   NZ_CP015886
Coordinates   2073480..2073986 (+) Length   168 a.a.
NCBI ID   WP_002226759.1    Uniprot ID   Q9JWB0
Organism   Neisseria meningitidis strain 38277     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2068480..2078986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT729_RS11935 (AT729_02014) - 2068491..2070026 (+) 1536 WP_002223111.1 sodium-dependent transporter -
  AT729_RS11940 (AT729_02015) - 2070023..2070115 (+) 93 WP_002233157.1 methionine/alanine import family NSS transporter small subunit -
  AT729_RS11945 (AT729_02016) lysA 2070175..2071395 (-) 1221 WP_002223113.1 diaminopimelate decarboxylase -
  AT729_RS11950 (AT729_02017) lptM 2071406..2071576 (-) 171 WP_002218098.1 LPS translocon maturation chaperone LptM -
  AT729_RS11955 (AT729_02018) cyaY 2071647..2071970 (+) 324 WP_002223115.1 iron donor protein CyaY -
  AT729_RS11960 (AT729_02019) - 2071997..2073013 (+) 1017 WP_002233159.1 YeiH family protein -
  AT729_RS11965 (AT729_02020) - 2073039..2073458 (+) 420 WP_002223117.1 DUF2251 domain-containing protein -
  AT729_RS11970 (AT729_02021) luxS 2073480..2073986 (+) 507 WP_002226759.1 S-ribosylhomocysteine lyase Regulator
  AT729_RS11975 (AT729_02022) polA 2074132..2076927 (+) 2796 WP_061726569.1 DNA polymerase I -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18725.49 Da        Isoelectric Point: 5.5451

>NTDB_id=155645 AT729_RS11970 WP_002226759.1 2073480..2073986(+) (luxS) [Neisseria meningitidis strain 38277]
MPLLDSFKVDHTRMHAPAVRVAKTMTTPKGDTITVFDLRFCVPNKEILPEKGIHTLEHLFAGFMRDHLNGNGVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMQDVLNVKDQSKIPELNEYQCGTYQMHSLAEAQQIAQNVLARKVAVNKNEELT
LDEGLLNA

Nucleotide


Download         Length: 507 bp        

>NTDB_id=155645 AT729_RS11970 WP_002226759.1 2073480..2073986(+) (luxS) [Neisseria meningitidis strain 38277]
ATGCCCCTACTAGACAGTTTCAAAGTCGATCACACCCGTATGCATGCCCCCGCCGTACGCGTGGCGAAAACCATGACCAC
GCCCAAAGGCGACACCATTACCGTGTTCGACCTGCGCTTTTGCGTTCCCAATAAAGAAATCCTGCCTGAAAAAGGCATAC
ACACGCTGGAGCATTTGTTCGCAGGTTTTATGCGCGACCACTTGAACGGCAACGGCGTGGAAATCATCGACATTTCCCCG
ATGGGCTGCCGCACCGGTTTTTATATGAGCCTTATCGGCACGCCTTCCGAACAGCAGGTCGCCGATGCGTGGCTGGCTTC
GATGCAGGATGTTTTGAATGTCAAAGACCAAAGCAAAATCCCCGAGTTGAACGAATACCAATGCGGCACTTATCAAATGC
ACTCGCTCGCCGAAGCGCAGCAAATCGCGCAAAACGTGTTGGCGCGCAAAGTGGCGGTGAACAAAAATGAAGAGCTGACG
CTGGATGAAGGGCTGCTGAACGCCTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9JWB0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

77.246

99.405

0.768