Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   AMD33_RS08670 Genome accession   NZ_CP012588
Coordinates   1661285..1662052 (+) Length   255 a.a.
NCBI ID   WP_002952299.1    Uniprot ID   A0AAN2DBC4
Organism   Streptococcus thermophilus strain MN-BM-A01     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1656285..1667052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMD33_RS08655 (AMD33_08625) - 1658601..1659284 (-) 684 WP_011226711.1 YoaK family protein -
  AMD33_RS08660 (AMD33_08630) rlmH 1659300..1659779 (-) 480 WP_011681766.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  AMD33_RS08665 (AMD33_08635) htrA 1659984..1661219 (+) 1236 WP_014727759.1 S1C family serine protease Regulator
  AMD33_RS08670 (AMD33_08640) spo0J 1661285..1662052 (+) 768 WP_002952299.1 ParB/RepB/Spo0J family partition protein Regulator
  AMD33_RS08675 (AMD33_08645) dnaA 1662291..1663655 (+) 1365 WP_014727271.1 chromosomal replication initiator protein DnaA -
  AMD33_RS08680 (AMD33_08650) dnaN 1663810..1664946 (+) 1137 WP_011680575.1 DNA polymerase III subunit beta -
  AMD33_RS08685 (AMD33_08655) - 1664997..1665188 (+) 192 WP_002886272.1 DUF951 domain-containing protein -
  AMD33_RS08690 (AMD33_08660) ychF 1665401..1666516 (+) 1116 WP_014727272.1 redox-regulated ATPase YchF -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29447.81 Da        Isoelectric Point: 9.6649

>NTDB_id=155636 AMD33_RS08670 WP_002952299.1 1661285..1662052(+) (spo0J) [Streptococcus thermophilus strain MN-BM-A01]
MSEQLKTLSISEIYPNPFQPRLKFSDEELVELSQSISENGLIQPIIVRKSDIIGYELIAGERRLRACKRLGMTEIPAVVK
EVTDQESRKQAIIENLQRSNLNPIEEAKAYRNLIDELTYSHEELAKAMGKSRPYISNALRLLQLPREIQTSIENGSLSQG
HARALLAIEDSRKQLTIFQQVVAERWSVRTLEKKLQELPRKQKSKKDTHVKDKEKELERSLGLPITLRYHKNHSGTIQIH
FSTEEDFNRIINKLI

Nucleotide


Download         Length: 768 bp        

>NTDB_id=155636 AMD33_RS08670 WP_002952299.1 1661285..1662052(+) (spo0J) [Streptococcus thermophilus strain MN-BM-A01]
ATGTCAGAACAACTCAAAACTTTATCTATTAGTGAAATTTACCCCAATCCTTTTCAACCTCGTCTAAAATTCTCCGATGA
AGAGTTAGTAGAACTAAGTCAATCAATATCAGAAAATGGTTTAATACAGCCAATTATTGTACGAAAATCTGACATTATTG
GTTATGAACTAATTGCTGGAGAAAGACGTTTACGAGCCTGTAAACGTTTAGGGATGACAGAAATCCCTGCAGTTGTAAAG
GAAGTTACAGATCAAGAGAGTCGTAAACAAGCTATTATTGAAAATCTACAACGATCAAATCTCAATCCTATTGAAGAAGC
AAAGGCCTATCGTAATTTAATTGATGAGTTAACTTATAGTCACGAGGAGCTCGCTAAAGCTATGGGAAAATCTAGACCAT
ATATTAGTAACGCTCTTAGACTACTACAACTTCCGCGAGAGATACAAACGAGTATTGAAAACGGAAGTCTGAGTCAGGGA
CATGCTAGAGCACTCTTAGCTATTGAGGATTCTCGAAAGCAGTTAACCATCTTTCAGCAGGTTGTGGCTGAAAGATGGTC
TGTTCGTACTCTAGAAAAAAAACTTCAGGAACTTCCTAGAAAACAAAAATCTAAAAAAGATACCCATGTAAAAGATAAAG
AAAAAGAACTTGAAAGATCACTAGGTCTCCCCATAACTCTACGTTATCACAAAAATCACTCAGGAACGATTCAAATACAC
TTTTCGACAGAAGAAGATTTTAACAGAATTATCAACAAGCTTATCTAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(8-95)

HTH domain found in ParB protein (HTH_ParB)

(147-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

56.863

100

0.569

Multiple sequence alignment