Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   AMD33_RS01205 Genome accession   NZ_CP012588
Coordinates   222651..223094 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain MN-BM-A01     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 217651..228094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMD33_RS01185 (AMD33_01185) - 218175..218927 (-) 753 WP_014727345.1 NUDIX domain-containing protein -
  AMD33_RS01190 (AMD33_01190) - 218991..220096 (-) 1106 Protein_224 AAA family ATPase -
  AMD33_RS01195 (AMD33_01195) gdhA 220440..221792 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  AMD33_RS01200 (AMD33_01200) - 222050..222460 (+) 411 WP_011680804.1 peptide deformylase -
  AMD33_RS01205 (AMD33_01205) rcrR 222651..223094 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  AMD33_RS01210 (AMD33_01210) rcrP 223098..224912 (+) 1815 WP_014727346.1 ABC transporter ATP-binding protein Regulator
  AMD33_RS01215 (AMD33_01215) rcrQ 224902..226680 (+) 1779 WP_014727347.1 ABC transporter ATP-binding protein Regulator
  AMD33_RS01220 (AMD33_01220) - 226836..227207 (+) 372 WP_041829277.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=155595 AMD33_RS01205 WP_002945408.1 222651..223094(+) (rcrR) [Streptococcus thermophilus strain MN-BM-A01]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=155595 AMD33_RS01205 WP_002945408.1 222651..223094(+) (rcrR) [Streptococcus thermophilus strain MN-BM-A01]
ATGCATGGGAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGTGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537

Multiple sequence alignment