Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   AN158_RS06305 Genome accession   NZ_CP012587
Coordinates   1394386..1395270 (-) Length   294 a.a.
NCBI ID   WP_065718983.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain CA-17     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1389386..1400270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AN158_RS06290 (AN158_06285) miaB 1391233..1392684 (+) 1452 WP_000218141.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  AN158_RS06295 (AN158_06290) - 1392722..1393810 (+) 1089 WP_000122983.1 PhoH family protein -
  AN158_RS06300 (AN158_06295) ybeY 1393820..1394296 (+) 477 WP_000703571.1 rRNA maturation RNase YbeY -
  AN158_RS06305 (AN158_06300) tonB2 1394386..1395270 (-) 885 WP_065718983.1 energy transducer TonB Machinery gene
  AN158_RS06310 (AN158_06305) - 1395501..1396172 (+) 672 WP_001193957.1 hypothetical protein -
  AN158_RS06315 (AN158_06310) - 1396330..1397043 (+) 714 WP_000201549.1 DUF3108 domain-containing protein -
  AN158_RS06320 (AN158_06315) - 1397116..1397691 (+) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  AN158_RS06325 (AN158_06320) wrbA 1397744..1398337 (-) 594 WP_021510968.1 NAD(P)H:quinone oxidoreductase -
  AN158_RS06330 (AN158_06325) - 1398625..1399872 (+) 1248 WP_000893466.1 YihY family inner membrane protein -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33603.44 Da        Isoelectric Point: 8.3773

>NTDB_id=155554 AN158_RS06305 WP_065718983.1 1394386..1395270(-) (tonB2) [Acinetobacter baumannii strain CA-17]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIRPTEDVIKHADFLAQADQQGSGA
FREAHRMSSNSPAPMPSDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSHQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDANMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=155554 AN158_RS06305 WP_065718983.1 1394386..1395270(-) (tonB2) [Acinetobacter baumannii strain CA-17]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCGTCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCGTCCTACTGAAGATGTGATCAAGCATGCAGACTTTTTAGCCCAAGCTGATCAACAAGGTTCAGGAGCT
TTTCGGGAAGCTCATCGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCACCAACAAAAGATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCGGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCGTTTGGCCGTTTTGA
TGCAAATATGAAAGATATTTCGGAACTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

99.66

100

0.997

Multiple sequence alignment