Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   A7329_RS24820 Genome accession   NZ_CP012582
Coordinates   5388030..5388554 (+) Length   174 a.a.
NCBI ID   WP_003116261.1    Uniprot ID   Q7WZP2
Organism   Pseudomonas aeruginosa strain PA_D21     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 5385675..5393799 5388030..5388554 within 0


Gene organization within MGE regions


Location: 5385675..5393799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7329_RS24805 (A7329_24805) thiO 5385675..5386769 (-) 1095 WP_033944813.1 glycine oxidase ThiO -
  A7329_RS24810 (A7329_24810) - 5386909..5387409 (+) 501 WP_016254062.1 GspH/FimT family pseudopilin -
  A7329_RS24815 (A7329_24815) - 5387532..5388020 (+) 489 WP_003141552.1 GspH/FimT family pseudopilin -
  A7329_RS24820 (A7329_24820) pilV 5388030..5388554 (+) 525 WP_003116261.1 type IV pilus modification protein PilV Machinery gene
  A7329_RS24825 (A7329_24825) - 5388563..5389378 (+) 816 WP_034027589.1 PilW family protein -
  A7329_RS24830 (A7329_24830) - 5389375..5389980 (+) 606 WP_003116263.1 pilus assembly PilX family protein -
  A7329_RS24835 (A7329_24835) - 5389994..5393470 (+) 3477 WP_034027586.1 pilus assembly protein -
  A7329_RS24840 (A7329_24840) - 5393473..5393799 (+) 327 WP_016254060.1 PilY2 family type 4a fimbrial biogenesis protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18763.51 Da        Isoelectric Point: 4.9113

>NTDB_id=155438 A7329_RS24820 WP_003116261.1 5388030..5388554(+) (pilV) [Pseudomonas aeruginosa strain PA_D21]
MSRETGFSMIEVLVALVLISIGVLGMVAMQGRTIQYTQESVQRNAAAMLASDLMEIMRADPDAVLNLRAQLREDSVYYKA
KGSDFPAAPARCAPLPADAKERLGCWAQQASKDLPGASALLNSQFYICRSPTPGTCDNTKGSAIEIQVAWRAMDGACFNA
SDSTLCTYSVRSEL

Nucleotide


Download         Length: 525 bp        

>NTDB_id=155438 A7329_RS24820 WP_003116261.1 5388030..5388554(+) (pilV) [Pseudomonas aeruginosa strain PA_D21]
ATGTCTCGAGAAACGGGTTTCAGCATGATCGAAGTACTGGTTGCTCTGGTGCTGATCAGCATTGGCGTACTGGGCATGGT
TGCCATGCAAGGGCGCACGATCCAGTACACGCAGGAGTCGGTACAACGCAATGCCGCAGCAATGCTTGCTAGCGACCTGA
TGGAAATAATGCGTGCGGACCCAGATGCCGTACTCAATCTACGCGCCCAACTACGCGAAGACTCGGTCTACTACAAGGCC
AAGGGCAGCGACTTTCCCGCAGCCCCAGCGCGCTGCGCGCCATTGCCAGCAGATGCTAAGGAACGTCTCGGCTGCTGGGC
CCAACAGGCCTCGAAAGACTTGCCGGGAGCCTCCGCACTCTTGAATAGCCAATTCTACATTTGTCGCAGCCCAACCCCGG
GTACCTGCGACAACACCAAAGGCTCGGCCATCGAAATCCAGGTTGCCTGGCGAGCCATGGATGGAGCGTGTTTCAACGCC
TCTGACTCCACCTTGTGCACCTACAGCGTCCGCTCCGAATTGTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7WZP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

59.429

100

0.598

Multiple sequence alignment