Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   A8140_RS04630 Genome accession   NZ_CP015863
Coordinates   945735..949115 (+) Length   1126 a.a.
NCBI ID   WP_033000429.1    Uniprot ID   -
Organism   Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 strain ATCC 25920 CAIM 519T     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 940735..954115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8140_RS04605 (A8140_04425) sucC 940830..941996 (+) 1167 WP_005426700.1 ADP-forming succinate--CoA ligase subunit beta -
  A8140_RS04610 (A8140_04430) sucD 941996..942868 (+) 873 WP_005436989.1 succinate--CoA ligase subunit alpha -
  A8140_RS04615 (A8140_04435) znuB 942998..943783 (-) 786 WP_005534223.1 zinc ABC transporter permease subunit ZnuB -
  A8140_RS04620 (A8140_04440) znuC 943776..944564 (-) 789 WP_005534221.1 zinc ABC transporter ATP-binding protein ZnuC -
  A8140_RS04625 (A8140_04445) znuA 944643..945524 (+) 882 WP_005534219.1 zinc ABC transporter substrate-binding protein ZnuA -
  A8140_RS04630 (A8140_04450) tfoS 945735..949115 (+) 3381 WP_033000429.1 AraC family transcriptional regulator Regulator
  A8140_RS04635 (A8140_04455) - 949871..950098 (+) 228 WP_005426705.1 FeoA family protein -
  A8140_RS04640 (A8140_04460) feoB 950098..952374 (+) 2277 WP_038862751.1 Fe(2+) transporter permease subunit FeoB -
  A8140_RS04645 (A8140_04465) - 952371..952601 (+) 231 WP_005534215.1 FeoC-like transcriptional regulator -
  A8140_RS04650 (A8140_04470) - 952711..953232 (-) 522 WP_005534212.1 YqhA family protein -
  A8140_RS04655 (A8140_04475) - 953382..953810 (-) 429 WP_005382194.1 HIT family protein -

Sequence

Protein


Download         Length: 1126 a.a.        Molecular weight: 126995.39 Da        Isoelectric Point: 5.9556

>NTDB_id=155422 A8140_RS04630 WP_033000429.1 945735..949115(+) (tfoS) [Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 strain ATCC 25920 CAIM 519T]
MLRQLALLFWVFILSFQAIASSEANAIFYPLPNQVKGTFIAAKKLFPGEQGGLWIHDVHGRVLFYDGQTTLPKSGSFLRN
KVEQLAYHKGSFWTFIENEVYQTYPNQERRLVFSLNPGSQIRKIGSSGNYIWVSDGVQFYTYNVETSELNSFSLLQLYQH
SNNSYVYINDAIFVETKWALATTSGVYLSEGSKFNHVVSSGKNYIEKVYYSHTRREILVGTLKGALIFNIYEPGKPVIRI
GASHVLTFAETNQEYWVGTEQGLYLYSFLTGEVTQVTPASFLELELASTKIYSLLNDNMGGMWIATNQGIRYYSLFSKKF
ERITFSSYDQQMLSGRIRQTLTGPDGALWFADDHKLYRSNNGSITDVLNVSSQINEFAFQGERLWVATSTGLEIYSLKNL
QQVTFPYLQVIAGKTIDHITADGPNRLWISSGYQLFNIDAVNQAMRNFGSEWLVSKFLPAKITRLYDKEELLLIGTDHGV
YEYDGERIRFNHFSEKYGESLDIITANDGSQWFASAYGVFRTIPGSSEKQVMEMSVANSRPACLLSDSEGVWLASSVGLS
YYHLSGQLMKHYSSSSGLINNEFLPGICNVIRRAEDSDRQLIFGSQYGLVKVDSSKLLVSNTPESKLIVSQVMLENEVMQ
VGSADLEEMKLPYGSSLSFLFGVMPKPDNQNLYYRLNESEKWQTLEGGQLTLEHLNSGDYHLQVSNDLQLASGLIGLDSR
FTVLKPWYLSKLAISGFTLAVIAVLALLTYSRSRYVLQANRDLAAQVTLKTNQLRHQSRVLLTSNQQLRKQIQVRNLLVD
HVAQSIKSSIDSIVNKLPSDVDSVTQDHLSKTYWQLNELKSAPEDTSSGSQNYNLSQITQSVVDVWREDFSKAGINVELQ
DEQKASRISLESFNLDVIFNSIFANIIKRSFRGQLVKLTLEEGDDIVSLSFIDHGTQLPSKASTIRPTSTNNVDLSMDNL
PQLVAASGGHLSMFTSDAQNKIEITWPCAQEPSHVEEALPEFAQTQQPQQEEMSPEQEWLMKVYQLVAEHYHDPEFGTAS
AAKMLFMSERSLQRRFKSASSRTLKDYVTEVRLETACEQLLAGEKISEVAFNCGFNDPSYFSQKFKLHFGLPPSKFAMTQ
ESQTSP

Nucleotide


Download         Length: 3381 bp        

>NTDB_id=155422 A8140_RS04630 WP_033000429.1 945735..949115(+) (tfoS) [Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 strain ATCC 25920 CAIM 519T]
TTGCTGCGCCAATTAGCCCTACTTTTTTGGGTTTTTATCCTCTCATTTCAAGCAATTGCTTCAAGTGAAGCGAATGCGAT
CTTTTACCCTTTGCCGAATCAGGTTAAGGGCACTTTTATTGCAGCGAAAAAATTGTTCCCCGGTGAACAAGGTGGGCTCT
GGATCCATGATGTTCATGGTCGTGTTCTGTTCTATGATGGCCAAACCACACTGCCAAAATCCGGTAGCTTTCTCAGAAAC
AAAGTAGAGCAGCTGGCTTACCACAAAGGCTCATTTTGGACATTTATTGAAAACGAGGTTTATCAAACTTACCCGAACCA
AGAACGTCGTTTAGTCTTTAGCCTCAACCCAGGCTCTCAGATCCGTAAGATAGGCTCATCCGGGAACTATATTTGGGTCA
GTGATGGTGTGCAGTTCTATACCTATAATGTTGAAACCAGCGAACTGAACTCCTTTTCTCTATTACAGCTCTATCAGCAT
AGCAACAACAGTTACGTCTATATTAATGACGCTATCTTTGTCGAAACCAAGTGGGCGTTGGCGACGACTTCAGGCGTATA
CCTATCAGAGGGCAGCAAGTTTAATCATGTTGTCTCATCGGGCAAAAATTACATTGAGAAAGTGTATTACTCCCATACTC
GTCGTGAAATCTTAGTCGGCACTTTAAAAGGCGCGTTGATATTTAATATCTATGAGCCAGGCAAACCTGTTATTCGAATT
GGCGCTTCTCATGTCTTAACCTTTGCTGAAACCAATCAAGAATACTGGGTAGGGACAGAGCAAGGTCTTTATTTGTATTC
CTTCTTAACTGGCGAAGTAACCCAAGTGACACCAGCAAGTTTTCTGGAGCTAGAGCTCGCCAGTACCAAAATTTACTCGT
TGCTGAACGATAATATGGGGGGAATGTGGATTGCCACCAACCAAGGCATTCGCTATTACTCTCTGTTTAGTAAAAAGTTT
GAGCGAATCACGTTCAGTAGTTATGACCAACAAATGCTCTCTGGTCGTATTCGGCAGACGCTTACCGGACCCGATGGGGC
ACTTTGGTTTGCGGACGATCATAAGTTGTATCGCTCGAACAATGGCAGTATTACCGATGTGTTGAATGTGTCGTCACAAA
TTAACGAATTTGCTTTTCAGGGAGAAAGGCTCTGGGTTGCTACGTCCACGGGTTTGGAAATATATAGCCTGAAAAACTTA
CAGCAGGTGACATTCCCTTACCTGCAAGTCATCGCAGGCAAGACAATCGATCATATTACCGCTGATGGCCCGAATCGCCT
TTGGATATCCAGTGGTTATCAGCTATTTAATATTGATGCTGTTAACCAGGCTATGAGAAATTTTGGCAGCGAATGGTTAG
TGAGTAAGTTCTTACCCGCGAAGATTACGCGTCTGTACGACAAGGAAGAGTTGCTGCTGATAGGGACAGACCACGGCGTT
TACGAGTATGACGGAGAGCGAATTCGCTTTAACCACTTTTCAGAAAAGTACGGTGAATCACTCGATATTATTACCGCAAA
TGATGGCTCACAGTGGTTTGCTTCCGCCTATGGCGTTTTCAGAACCATTCCGGGCAGCAGTGAAAAACAAGTGATGGAGA
TGAGTGTCGCAAACTCTCGCCCAGCTTGTTTGCTTAGTGATTCGGAAGGGGTGTGGCTTGCTTCTTCTGTTGGCTTAAGT
TACTACCATTTATCTGGGCAGCTCATGAAGCATTACTCTTCTTCATCGGGCCTTATCAATAATGAATTCTTACCAGGCAT
TTGTAATGTTATCCGTCGTGCTGAAGATAGTGATCGCCAACTTATCTTTGGCTCTCAGTATGGGTTAGTTAAAGTTGACT
CGTCTAAATTGCTGGTATCTAACACGCCAGAATCTAAGCTTATTGTTAGCCAAGTCATGCTGGAAAATGAAGTGATGCAA
GTGGGTAGTGCCGACTTAGAAGAGATGAAGCTGCCTTATGGGTCGTCCCTTAGTTTCCTTTTTGGTGTGATGCCCAAGCC
TGACAATCAGAATTTGTATTATCGCTTAAATGAAAGTGAAAAATGGCAAACGTTAGAAGGTGGGCAATTAACGTTAGAAC
ACCTTAATTCTGGCGATTACCACTTACAGGTTAGTAATGACTTACAACTGGCTTCGGGTCTGATTGGATTAGATTCCAGA
TTTACAGTGCTTAAACCATGGTATCTATCGAAGTTGGCCATATCGGGTTTTACCTTGGCTGTTATTGCGGTTCTTGCCCT
TCTAACGTACTCGCGCTCACGCTATGTGCTGCAAGCTAACCGAGATCTGGCAGCTCAAGTTACGCTAAAAACCAACCAGC
TGCGCCATCAAAGTCGAGTGCTGTTGACCAGTAACCAACAATTGAGAAAGCAGATTCAGGTAAGAAACCTGCTGGTGGAT
CATGTTGCTCAATCGATAAAGTCGAGTATTGATTCGATCGTGAACAAGCTTCCTAGTGATGTGGATTCGGTAACTCAAGA
CCATTTATCCAAGACCTACTGGCAATTGAACGAGCTTAAAAGTGCTCCTGAAGACACCAGCAGCGGCAGTCAAAATTACA
ACTTAAGTCAGATAACCCAATCGGTGGTGGATGTTTGGCGCGAGGACTTTTCAAAAGCAGGCATTAATGTCGAACTGCAA
GATGAGCAAAAGGCGAGCCGCATTTCACTAGAGAGCTTCAACCTTGATGTCATTTTTAACAGCATCTTTGCCAACATCAT
CAAGCGCTCGTTCCGGGGACAGTTGGTTAAATTAACACTGGAAGAGGGCGATGATATTGTCTCGCTGAGCTTCATTGACC
ATGGTACTCAGTTGCCAAGTAAAGCATCGACAATACGTCCAACGAGCACCAACAATGTTGACTTAAGTATGGATAACCTG
CCTCAATTAGTTGCAGCCAGTGGCGGTCATTTATCGATGTTCACTTCTGATGCTCAAAATAAGATAGAGATTACGTGGCC
ATGTGCTCAAGAGCCAAGTCATGTTGAGGAGGCGCTTCCTGAGTTTGCTCAGACACAGCAACCTCAACAAGAAGAGATGT
CGCCTGAGCAAGAGTGGTTAATGAAAGTGTATCAGTTAGTGGCTGAGCACTACCACGACCCAGAGTTTGGTACGGCATCT
GCCGCTAAGATGTTGTTTATGTCTGAGCGAAGCTTGCAGAGACGATTTAAGTCGGCGTCGTCCAGAACACTAAAAGATTA
TGTAACGGAAGTCAGGTTGGAGACCGCATGTGAGCAGTTGCTAGCTGGTGAGAAGATCAGTGAAGTTGCCTTCAACTGTG
GCTTCAATGACCCATCCTACTTTAGCCAGAAGTTTAAATTACACTTTGGGTTACCGCCGTCTAAGTTCGCGATGACACAA
GAGAGCCAAACAAGCCCATAG

Domains

Predicted by InterProScan.

Helix-turn-helix domain (HTH_18)

(1042-1116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

39.308

100

0.393

Multiple sequence alignment