Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   A8714_RS00160 Genome accession   NZ_CP015853
Coordinates   19309..19785 (-) Length   158 a.a.
NCBI ID   WP_001186192.1    Uniprot ID   A0A0H3JIA8
Organism   Escherichia coli strain ATCC 43889     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 14309..24785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8714_RS00110 (A8714_00085) sbmC 14801..15274 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  A8714_RS00115 (A8714_00090) yeeA 15473..16531 (+) 1059 WP_001202488.1 FUSC family protein -
  A8714_RS00120 (A8714_00095) tmaR 16703..17032 (+) 330 WP_000450409.1 DUF496 family protein -
  A8714_RS29880 - 17133..17315 (-) 183 WP_001016346.1 EutP/PduV family microcompartment system protein -
  A8714_RS29885 - 17369..17515 (+) 147 Protein_19 transposase domain-containing protein -
  A8714_RS00135 (A8714_00105) - 17804..17884 (-) 81 Protein_20 hypothetical protein -
  A8714_RS00140 (A8714_00110) yeeW 17930..18124 (-) 195 WP_000988600.1 DUF5983 family protein -
  A8714_RS00145 (A8714_00115) cbtA 18121..18494 (-) 374 Protein_22 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  A8714_RS00150 (A8714_00120) cbeA 18583..18951 (-) 369 WP_001285587.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  A8714_RS00155 (A8714_00125) yeeT 19025..19246 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  A8714_RS00160 (A8714_00130) radC 19309..19785 (-) 477 WP_001186192.1 RadC family protein Machinery gene
  A8714_RS00165 (A8714_00135) - 19800..20279 (-) 480 WP_000860080.1 antirestriction protein -
  A8714_RS00170 (A8714_00140) - 20361..21182 (-) 822 WP_001234544.1 DUF932 domain-containing protein -
  A8714_RS00180 (A8714_00145) - 21403..21813 (-) 411 WP_000846711.1 hypothetical protein -
  A8714_RS00185 (A8714_00150) - 21829..22512 (-) 684 WP_000775497.1 hypothetical protein -
  A8714_RS00190 (A8714_00155) - 22648..23718 (-) 1071 WP_000102660.1 patatin-like phospholipase family protein -
  A8714_RS00195 (A8714_00160) - 23715..24620 (-) 906 WP_000203545.1 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=155322 A8714_RS00160 WP_001186192.1 19309..19785(-) (radC) [Escherichia coli strain ATCC 43889]
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=155322 A8714_RS00160 WP_001186192.1 19309..19785(-) (radC) [Escherichia coli strain ATCC 43889]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3JIA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment