Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   A8713_RS22740 Genome accession   NZ_CP015849
Coordinates   5239098..5241368 (+) Length   756 a.a.
NCBI ID   WP_064535450.1    Uniprot ID   -
Organism   Streptomyces sp. SAT1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5234098..5246368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8713_RS32525 rpmB 5236634..5236819 (-) 186 WP_003993230.1 50S ribosomal protein L28 -
  A8713_RS22735 (A8713_22720) - 5237086..5239014 (+) 1929 WP_107440687.1 DAK2 domain-containing protein -
  A8713_RS22740 (A8713_22725) recG/mmsA 5239098..5241368 (+) 2271 WP_064535450.1 ATP-dependent DNA helicase RecG Machinery gene
  A8713_RS22745 (A8713_22730) rsmD 5241508..5242095 (+) 588 WP_018567922.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  A8713_RS22750 (A8713_22735) coaD 5242122..5242601 (+) 480 WP_064535451.1 pantetheine-phosphate adenylyltransferase -
  A8713_RS22755 (A8713_22740) - 5242700..5243830 (+) 1131 WP_064535452.1 hypothetical protein -
  A8713_RS22760 (A8713_22745) - 5243989..5244642 (+) 654 WP_064535453.1 DUF177 domain-containing protein -
  A8713_RS22765 (A8713_22750) rpmF 5244645..5244818 (+) 174 WP_003951102.1 50S ribosomal protein L32 -
  A8713_RS22770 (A8713_22755) rnc 5244826..5245650 (+) 825 WP_107440688.1 ribonuclease III -

Sequence

Protein


Download         Length: 756 a.a.        Molecular weight: 81084.61 Da        Isoelectric Point: 6.4835

>NTDB_id=155302 A8713_RS22740 WP_064535450.1 5239098..5241368(+) (recG/mmsA) [Streptomyces sp. SAT1]
MDPVPALPEPLRQPLKSVLGPATAKVMAEHLGLHTVGDLLHHYPRRYEERGQLTHLADLPMDEHVTVVAQVADARLHSFA
SSRAPRGKGQRLEVTITDGSGRLQLVFFGNGVHKPHKELLPGTRALFAGKVSVFNRRLQLAHPAYELLTGDTGDSEETVG
SWAGALIPIYPATAKLESWKIGKAVQTVLPTAQEAVDPLPDSLRAGRGLVTLPEALLKIHRPHTKADIADARARLKWDEA
FVLQVALARRRHADAQLPAVARRPRPGGILDAFDDRLPFTLTEGQRKVSGEIFADLATEHPMHRLLQGEVGSGKTMVALR
AMLAVVDAGGQAALLAPTEVLAQQHHRSITEMMGELAEGGTLGGPEHATKVVLLTGSMGAAARRRALLDLATGEAGVVIG
THALIEDKVRFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIAS
HVVPAADKPHFLARAWERVREEAAEGHQAYVVCPRIGDEEDDPRKGSGKKSAKAGKTAEGAEGAETPEGADKRPPLAVLD
VAATLAEGPLKGLRVEALHGRMQPDDKDAVMRRFAAGDTDVLVATTVIEVGVNVPNATVMVITDADRFGVSQLHQLRGRV
GRGSAPGLCLLVTEMPEASPARQRLNAVAATLDGFELSRIDLEQRREGDVLGQAQSGARTSLRVLAVIEDEEIIAEAREE
AAALVAADPALESLPGLRTALDALLDDEREQYLEKG

Nucleotide


Download         Length: 2271 bp        

>NTDB_id=155302 A8713_RS22740 WP_064535450.1 5239098..5241368(+) (recG/mmsA) [Streptomyces sp. SAT1]
ATGGATCCCGTGCCCGCACTGCCAGAACCACTGCGCCAACCGCTCAAGTCGGTGCTCGGCCCCGCCACCGCGAAGGTGAT
GGCCGAGCACCTCGGCCTGCACACCGTCGGCGACCTCCTCCACCACTACCCCCGCAGATACGAGGAGCGCGGCCAGCTCA
CCCACCTCGCCGACCTCCCCATGGACGAGCACGTCACCGTGGTCGCCCAGGTCGCCGACGCCCGCCTGCACTCCTTCGCC
TCCTCCCGGGCGCCGCGCGGCAAGGGCCAGCGCCTGGAGGTGACGATCACCGACGGCAGCGGCCGGCTCCAGCTCGTCTT
CTTCGGCAACGGCGTGCACAAACCGCACAAGGAGCTGCTGCCGGGCACGCGCGCGCTGTTCGCGGGCAAGGTCTCCGTCT
TCAACCGGCGGCTCCAGCTGGCCCACCCCGCCTACGAACTGCTCACCGGCGACACCGGCGACTCCGAGGAGACCGTCGGG
TCCTGGGCGGGCGCCCTCATCCCGATCTACCCGGCCACCGCCAAGCTGGAGTCCTGGAAGATCGGCAAGGCCGTCCAGAC
CGTTCTGCCCACCGCCCAGGAAGCCGTCGACCCGCTGCCCGACTCCCTGCGCGCGGGCCGCGGCCTGGTCACCCTCCCCG
AGGCCCTGCTCAAGATCCACCGCCCGCACACCAAGGCGGACATCGCCGACGCCCGCGCCCGCCTGAAGTGGGACGAGGCG
TTCGTCCTCCAGGTCGCCCTGGCCCGCCGCCGGCACGCCGACGCCCAGTTGCCCGCCGTCGCCCGCCGCCCGCGCCCCGG
CGGCATCCTCGACGCCTTCGACGACCGGCTGCCCTTCACCCTCACCGAGGGCCAGCGCAAGGTCTCCGGGGAGATCTTCG
CCGACCTGGCCACCGAGCACCCGATGCACCGCCTGCTCCAGGGCGAGGTGGGCTCCGGCAAGACCATGGTGGCGCTGCGC
GCCATGCTCGCCGTGGTCGACGCGGGCGGGCAGGCCGCCCTGCTCGCCCCCACCGAGGTGCTGGCCCAGCAGCACCACCG
GTCGATCACCGAGATGATGGGCGAGCTGGCCGAGGGCGGCACCCTCGGCGGACCCGAGCACGCCACCAAGGTGGTGCTGC
TCACCGGCTCCATGGGCGCCGCCGCCCGCCGCCGTGCCCTGCTCGACCTGGCCACCGGCGAGGCCGGCGTGGTCATCGGC
ACCCATGCGCTGATCGAGGACAAGGTGCGCTTCCACGACCTCGGACTCGTGGTCGTCGACGAGCAGCACCGCTTCGGCGT
CGAGCAGCGCGACGCCCTGCGCGGCAAGGGCAAGCAGCCCCCGCACCTGCTGGTCATGACCGCCACTCCCATTCCGCGCA
CGGTCGCGATGACGGTCTTCGGCGACCTGGAGACCTCCGTCCTGGACCAGCTCCCGGCCGGCCGCTCGCCCATCGCCAGC
CATGTCGTCCCGGCCGCCGACAAACCGCACTTCCTCGCGCGCGCCTGGGAGCGGGTGCGCGAGGAAGCGGCCGAGGGCCA
CCAGGCGTACGTCGTCTGCCCGCGCATCGGCGACGAGGAGGACGACCCGAGGAAGGGGTCCGGGAAGAAGTCCGCGAAGG
CCGGGAAGACGGCGGAGGGCGCGGAGGGCGCGGAGACCCCGGAGGGCGCCGACAAGCGCCCGCCGCTCGCGGTCCTGGAC
GTGGCCGCCACGCTCGCCGAGGGCCCCCTGAAGGGGCTGCGGGTGGAGGCGCTGCACGGCAGGATGCAGCCCGACGACAA
GGACGCGGTGATGCGCCGCTTCGCCGCGGGCGACACCGACGTCCTGGTCGCCACCACCGTCATCGAGGTCGGGGTCAACG
TCCCCAACGCCACCGTGATGGTGATCACCGACGCCGACCGCTTCGGCGTCTCCCAGCTGCACCAGCTGCGCGGCCGGGTC
GGCCGCGGCTCGGCCCCGGGCCTGTGCCTGCTGGTCACCGAGATGCCCGAGGCGAGCCCCGCCCGCCAGCGGCTGAACGC
GGTCGCCGCCACCCTGGACGGCTTCGAGCTCTCCCGCATCGACCTCGAACAGCGCCGCGAGGGCGACGTCCTCGGCCAGG
CCCAGTCCGGGGCCCGCACCAGCCTGCGGGTGCTCGCCGTCATCGAGGACGAGGAGATCATCGCCGAGGCCCGCGAGGAG
GCCGCCGCCCTGGTCGCCGCCGACCCCGCCCTGGAGTCGCTGCCCGGACTGCGCACGGCCCTGGACGCCCTGCTGGACGA
CGAGCGGGAGCAGTACCTGGAGAAGGGCTGA

Domains

Predicted by InterProScan.

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(65-148)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(671-732)

Helicase conserved C-terminal domain (Helicase_C)

(571-643)

DEAD/DEAH box helicase (DEAD)

(305-455)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

36.792

98.148

0.361
  recG/mmsA Streptococcus pneumoniae R36A

36.792

98.148

0.361

Multiple sequence alignment