Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   A8713_RS20620 Genome accession   NZ_CP015849
Coordinates   4752039..4752653 (+) Length   204 a.a.
NCBI ID   WP_064535076.1    Uniprot ID   -
Organism   Streptomyces sp. SAT1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4747039..4757653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8713_RS20605 (A8713_20595) - 4749174..4750109 (+) 936 WP_064535072.1 ABC transporter ATP-binding protein -
  A8713_RS20610 (A8713_20600) - 4750106..4750846 (+) 741 WP_064535074.1 ABC transporter permease -
  A8713_RS20615 (A8713_20605) - 4750852..4752042 (+) 1191 WP_064537616.1 histidine kinase -
  A8713_RS20620 (A8713_20610) vraR 4752039..4752653 (+) 615 WP_064535076.1 response regulator transcription factor Regulator
  A8713_RS20625 (A8713_20615) - 4752685..4753536 (-) 852 WP_064535078.1 transglutaminase-like domain-containing protein -
  A8713_RS20630 (A8713_20620) - 4753554..4754612 (-) 1059 WP_079159059.1 GNAT family N-acetyltransferase -
  A8713_RS20635 (A8713_20625) fdxA 4754753..4755073 (+) 321 WP_018571242.1 ferredoxin -
  A8713_RS20640 (A8713_20630) - 4755183..4756274 (+) 1092 WP_064535082.1 bifunctional succinyldiaminopimelate transaminase/glutamate-prephenate aminotransferase -
  A8713_RS20645 (A8713_20635) - 4756447..4756866 (-) 420 WP_064535083.1 hypothetical protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 21502.67 Da        Isoelectric Point: 5.1079

>NTDB_id=155295 A8713_RS20620 WP_064535076.1 4752039..4752653(+) (vraR) [Streptomyces sp. SAT1]
MSSTIKVLLAEDQSMVREALAALLGLEDDIEVVAQVARGDEVVAAAHAHGIDVALLDIEMPGCTGIEAAARLHRELPDVR
LVVLTTFGRPGYLRSAMEAGADAFLVKDAPAAQLAAAVRKVLAGERVIDPTLAAAALAEGANPLTDREREVLRAAADGST
NAELAAALHLSQGTVRNYLSTAIQKLAVRNRTEAVRIAREKGWL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=155295 A8713_RS20620 WP_064535076.1 4752039..4752653(+) (vraR) [Streptomyces sp. SAT1]
ATGAGCAGCACGATCAAGGTCCTCCTCGCCGAGGACCAGTCGATGGTCCGCGAGGCACTGGCCGCCCTGCTCGGCCTGGA
GGACGACATCGAGGTCGTCGCGCAGGTGGCCCGCGGCGACGAGGTCGTGGCCGCCGCGCACGCCCACGGGATCGACGTGG
CCCTGCTCGACATCGAGATGCCCGGCTGCACCGGCATCGAGGCCGCCGCCCGGCTCCACCGGGAGCTGCCGGACGTCCGG
CTGGTGGTGCTCACCACCTTCGGCCGCCCCGGCTATCTGCGCAGCGCCATGGAGGCGGGCGCCGACGCCTTCCTCGTCAA
GGACGCCCCGGCCGCCCAGCTCGCCGCGGCCGTGCGCAAGGTACTGGCCGGGGAGCGGGTCATCGACCCCACGCTGGCCG
CCGCCGCCCTCGCCGAGGGCGCCAACCCGCTCACCGACCGCGAGCGCGAGGTGCTGCGCGCCGCCGCCGACGGCTCCACC
AACGCCGAGCTGGCCGCGGCCCTGCACCTGTCCCAGGGCACCGTCCGCAACTACCTCTCCACGGCCATCCAGAAGCTCGC
CGTCCGCAACAGGACGGAAGCGGTCCGCATCGCCCGGGAGAAGGGCTGGTTGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-118)

Bacterial regulatory proteins, luxR family (GerE)

(143-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

35.749

100

0.363